Analyzing Cancer Patients' Experiences with Embedding-based Topic Modeling and LLMs
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Abstract (arXiv)
This study investigates the use of neural topic modeling and LLMs to uncover meaningful themes from patient storytelling data, to offer insights that could contribute to more patient-oriented healthcare practices. We analyze a collection of transcribed interviews with cancer patients (132,722 words in 13 interviews). We first evaluate BERTopic and Top2Vec for individual interview summarization by using similar preprocessing, chunking, and clustering configurations to ensure a fair comparison on Keyword Extraction. LLMs (GPT4) are then used for the next step topic labeling. Their outputs for a single interview (I0) are rated through a small-scale human evaluation, focusing on coherence, clarity, and relevance. Based on the preliminary results and evaluation, BERTopic shows stronger performance and is selected for further experimentation using three clinically oriented embedding models. We then analyzed the full interview collection with the best model setting. Results show that domain-specific embeddings improved topic textitprecision and textitinterpretability, with BioClinicalBERT producing the most consistent results across transcripts. The global analysis of the full dataset of 13 interviews, using the BioClinicalBERT embedding model, reveals the most dominant topics throughout all 13 interviews, namely ``Coordination and Communication in Cancer Care Management" and ``Patient Decision-Making in Cancer Treatment Journey''. Although the interviews are machine translations from Dutch to English, and clinical professionals are not involved in this evaluation, the findings suggest that neural topic modeling, particularly BERTopic, can help provide useful feedback to clinicians from patient interviews. This pipeline could support more efficient document navigation and strengthen the role of patients' voices in healthcare workflows.
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References · 8
- 2020Domain-Specific Language Model Pretraining for Biomedical Natural Language Processingcited by 996
- 2019Publicly Available Clinical BERT Embeddingscited by 995
- 2018Universal Sentence Encodercited by 485
- 2020Top2Vec: Distributed Representations of Topicscited by 124
- 2019Natural Language Processing of Clinical Notes on Chronic Diseases: Systematic Reviewcited by 36
- 2023Neural Machine Translation of Clinical Text: An Empirical Investigation into Multilingual Pre-Trained Language Models and Transfer-Learningcited by 8
- 2025MaLei at MultiClinSUM: Summarisation of Clinical Documents using Perspective-Aware Iterative Self-Prompting with LLMscited by 6
- 2023Topic Modelling of Swedish Newspaper Articles about Coronavirus: a Case Study using Latent Dirichlet Allocation Methodcited by 2
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