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Transformers for Multimodal Brain State Decoding: Integrating Functional Magnetic Resonance Imaging Data and Medical Metadata

arXiv 2512.08462 ↗First posted 9 Dec 2025cs.LGcited by 0

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Abstract (arXiv)

Decoding brain states from functional magnetic resonance imaging (fMRI) data is vital for advancing neuroscience and clinical applications. While traditional machine learning and deep learning approaches have made strides in leveraging the high-dimensional and complex nature of fMRI data, they often fail to utilize the contextual richness provided by Digital Imaging and Communications in Medicine (DICOM) metadata. This paper presents a novel framework integrating transformer-based architectures with multimodal inputs, including fMRI data and DICOM metadata. By employing attention mechanisms, the proposed method captures intricate spatial-temporal patterns and contextual relationships, enhancing model accuracy, interpretability, and robustness. The potential of this framework spans applications in clinical diagnostics, cognitive neuroscience, and personalized medicine. Limitations, such as metadata variability and computational demands, are addressed, and future directions for optimizing scalability and generalizability are discussed.

Key facts. No citing papers in the map yet (data through 7 Oct 2026). Builds on 12 of its 35 references that are in the map. First posted on arXiv 9 Dec 2025.

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References · 12

  1. 2017Attention Is All You Needcited by 59,932
  2. 2020An Image is Worth 16x16 Words: Transformers for Image Recognition at Scalecited by 29,915
  3. 2017A Unified Approach to Interpreting Model Predictionscited by 6,488
  4. 2015Domain-Adversarial Training of Neural Networkscited by 3,023
  5. 2021TransUNet: Transformers Make Strong Encoders for Medical Image Segmentationcited by 1,552
  6. 2017A Survey on Deep Learning in Medical Image Analysiscited by 1,182
  7. 2021UNETR: Transformers for 3D Medical Image Segmentationcited by 954
  8. 2016Efficient Multi-Scale 3D CNN with Fully Connected CRF for Accurate Brain Lesion Segmentationcited by 263
  9. 2016Neural Encoding and Decoding with Deep Learning for Dynamic Natural Visioncited by 58
  10. 2021ConvNets vs. Transformers: Whose Visual Representations are More Transferable?cited by 35
  11. 2013Deep learning for neuroimaging: a validation studycited by 21
  12. 2024Transformer RGBT Tracking with Spatio-Temporal Multimodal Tokenscited by 11

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