Fine-tuning LLMs with variational Bayesian last layer for high-dimensional Bayesian optimization
Not on the map. Why?
Abstract (arXiv)
A plethora of applications entail solving black-box optimization problems with high evaluation costs, including drug discovery, material design, as well as hyperparameter tuning. Toward finding the global optimum of such black-box optimization problems with sample efficiency, Bayesian optimization (BO) is a theoretically elegant framework that relies on a probabilistic surrogate model so as to iteratively select the query point with well-balanced exploration-exploitation tradeoffs. The Gaussian process (GP), as the de-facto choice for surrogate modeling, has achieved compelling performances for vanilla BO with low-dimensional continuous variables. However, GPs fall short in coping with high-dimensional counterparts with it irregular variables (e.g., categorical, ordinal, etc.). To alleviate this, neural network-based surrogates have been explored. Inspired by the powerful capabilities of LLMs, we adopt the LLM as the surrogate to model the mapping from the high-dimensional input variables to the objective function. To adapt to the current problem, we leverage the low-rank adaptation (LoRA) to fine-tune the LLM parameters together with the posterior of a linear regression head via the variational Bayesian last layer (VBLL) framework. The resulting LoRA-VBLL is not only computationally light compared to existing alternatives, but also admits recursive updates. To automate the critical selection of the LoRA rank as well as other hyperparameters, a weighted ensemble (ENS) of LoRA-VBLL surrogates has been devised, which further accommodates continual update of the per-model weight and individual LoRA-VBLL parameters via recursive Bayes. Extensive experimental results demonstrate the compelling performance of the proposed (ENS-)LoRA-VBLL approaches on various high-dimensional benchmarks and the real-world molecular optimization tasks.
Key facts. Cited by 2 papers in the map (data through 14 Oct 2026). Builds on 47 of its 72 references that are in the map. First posted on arXiv 1 Oct 2025.
Builds on
47 of 72 references.
References · 47
- 2020Language Models are Few-Shot Learnerscited by 32,419
- 2019PyTorch: An Imperative Style, High-Performance Deep Learning Librarycited by 20,305
- 2024The Llama 3 Herd of Modelscited by 14,715
- 2021LoRA: Low-Rank Adaptation of Large Language Modelscited by 14,380
- 2015Dropout as a Bayesian Approximation: Representing Model Uncertainty in Deep Learningcited by 4,448
- 2021On the Opportunities and Risks of Foundation Modelscited by 4,033
- 2016Simple and Scalable Predictive Uncertainty Estimation using Deep Ensemblescited by 3,926
- 2019HuggingFace's Transformers: State-of-the-art Natural Language Processingcited by 2,218
- 2016Automatic chemical design using a data-driven continuous representation of moleculescited by 765
- 2017Deep Neural Networks as Gaussian Processescited by 622
- 2015Deep Kernel Learningcited by 445
- 2017A Tutorial on Thompson Samplingcited by 433
35 more
- 2019Scalable Global Optimization via Local Bayesian Optimizationcited by 374
- 2014Stochastic Gradient Hamiltonian Monte Carlocited by 343
- 2015Scalable Bayesian Optimization Using Deep Neural Networkscited by 284
- 2014Robots that can adapt like animalscited by 204
- 2013Bayesian Optimization in a Billion Dimensions via Random Embeddingscited by 182
- 2022LIFT: Language-Interfaced Fine-Tuning for Non-Language Machine Learning Taskscited by 148
- 2015High Dimensional Bayesian Optimisation and Bandits via Additive Modelscited by 139
- 2024Large Language Models to Enhance Bayesian Optimizationcited by 135
- 2020Neural Thompson Samplingcited by 128
- 2023Bayesian Low-rank Adaptation for Large Language Modelscited by 115
- 2024Vanilla Bayesian Optimization Performs Great in High Dimensionscited by 92
- 2023AdapterSoup: Weight Averaging to Improve Generalization of Pretrained Language Modelscited by 84
- 2019Combinatorial Bayesian Optimization using the Graph Cartesian Productcited by 79
- 2019ChemBO: Bayesian Optimization of Small Organic Molecules with Synthesizable Recommendationscited by 77
- 2024Variational Bayesian Last Layerscited by 69
- 2018Bayesian Optimization of Combinatorial Structurescited by 64
- 2020Accelerating high-throughput virtual screening through molecular pool-based active learningcited by 59
- 2019Bayesian Optimisation over Multiple Continuous and Categorical Inputscited by 56
- 2020BOSS: Bayesian Optimization over String Spacescited by 54
- 2021Think Global and Act Local: Bayesian Optimisation over High-Dimensional Categorical and Mixed Search Spacescited by 53
- 2023A Study of Bayesian Neural Network Surrogates for Bayesian Optimizationcited by 50
- 2024BLoB: Bayesian Low-Rank Adaptation by Backpropagation for Large Language Modelscited by 50
- 2018Meta-Learning Priors for Efficient Online Bayesian Regressioncited by 48
- 2024A Sober Look at LLMs for Material Discovery: Are They Actually Good for Bayesian Optimization Over Molecules?cited by 48
- 2024ADO-LLM: Analog Design Bayesian Optimization with In-Context Learning of Large Language Modelscited by 44
- 2024Standard Gaussian Process is All You Need for High-Dimensional Bayesian Optimizationcited by 34
- 2023Use Your INSTINCT: INSTruction optimization for LLMs usIng Neural bandits Coupled with Transformerscited by 30
- 2023Bayesian Optimization over High-Dimensional Combinatorial Spaces via Dictionary-based Embeddingscited by 24
- 2024A survey and benchmark of high-dimensional Bayesian optimization of discrete sequencescited by 23
- 2022Surrogate modeling for Bayesian optimization beyond a single Gaussian processcited by 22
- 2021BOiLS: Bayesian Optimisation for Logic Synthesiscited by 18
- 2020High-Dimensional Bayesian Optimization via Nested Riemannian Manifoldscited by 17
- 2023Framework and Benchmarks for Combinatorial and Mixed-variable Bayesian Optimizationcited by 16
- 2021Incremental Ensemble Gaussian Processescited by 15
- 2024Bayesian Optimization via Continual Variational Last Layer Trainingcited by 13
Built on by
Citing papers per year: 2026: 2.
2 papers.