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Robust brain age estimation from structural MRI with contrastive learning

arXiv 2507.01794 ↗First posted 2 Jul 2025eess.IV cs.CVcited by 0

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Abstract (arXiv)

Estimating brain age from structural MRI has emerged as a powerful tool for characterizing normative and pathological aging. In this work, we explore contrastive learning as a scalable and robust alternative to L1-supervised approaches for brain age estimation. We introduce a novel contrastive loss function, Lexp, and evaluate it across multiple public neuroimaging datasets comprising over 20,000 scans. Our experiments reveal four key findings. First, scaling pre-training on diverse, multi-site data consistently improves generalization performance, cutting external mean absolute error (MAE) nearly in half. Second, Lexp is robust to site-related confounds, maintaining low scanner-predictability as training size increases. Third, contrastive models reliably capture accelerated aging in patients with cognitive impairment and Alzheimer's disease, as shown through brain age gap analysis, ROC curves, and longitudinal trends. Lastly, unlike L1-supervised baselines, Lexp maintains a strong correlation between brain age accuracy and downstream diagnostic performance, supporting its potential as a foundation model for neuroimaging. These results position contrastive learning as a promising direction for building generalizable and clinically meaningful brain representations.

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References · 25

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  12. 2016Predicting brain age with deep learning from raw imaging data results in a reliable and heritable biomarkercited by 72
13 more
  1. 2021Contrastive Learning with Continuous Proxy Meta-Data for 3D MRI Classificationcited by 49
  2. 2020Detect and Correct Bias in Multi-Site Neuroimaging Datasetscited by 45
  3. 2019Machine Learning with Multi-Site Imaging Data: An Empirical Study on the Impact of Scanner Effectscited by 43
  4. 2022Unbiased Supervised Contrastive Learningcited by 40
  5. 2022Rethinking the Augmentation Module in Contrastive Learning: Learning Hierarchical Augmentation Invariance with Expanded Viewscited by 37
  6. 2021Global-Local Transformer for Brain Age Estimationcited by 34
  7. 2022Contrastive learning for regression in multi-site brain age predictioncited by 14
  8. 2024Anatomical Foundation Models for Brain MRIscited by 13
  9. 2022Integrating Prior Knowledge in Contrastive Learning with Kernelcited by 11
  10. 2021Conditional Alignment and Uniformity for Contrastive Learning with Continuous Proxy Labelscited by 7
  11. 2021Benchmarking CNN on 3D Anatomical Brain MRI: Architectures, Data Augmentation and Deep Ensemble Learningcited by 6
  12. 2023Learning to diagnose cirrhosis from radiological and histological labels with joint self and weakly-supervised pretraining strategiescited by 3
  13. 2024Contrastive Learning with Adaptive Neighborhoods for Brain Age Prediction on 3D Stiffness Mapscited by 3

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