Good Enough? An Investigation on the Impact of Label Quality in Large-Scale Medical Datasets
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Abstract (arXiv)
Manually refining radiological segmentation masks is highly resource-intensive. To determine when this expert commitment is truly justified for the training of segmentation models, we investigate the relationship between label quality and model performance. Expanding beyond models trained directly for inference, we conduct the first study isolating the impact of label quality in pre-training datasets. While high-quality labels remain essential for models proceeding directly to deployment, we find no evidence that strict label quality is crucial for pre-training efficacy. These results question the necessity of exhaustive human-in-the-loop refinement for massive corpora intended for pretraining and suggest that expert effort is more effectively invested in well-curated downstream target datasets.
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References · 18
- 2015U-Net: Convolutional Networks for Biomedical Image Segmentationcited by 19,713
- 2022TotalSegmentator: robust segmentation of 104 anatomical structures in CT imagescited by 613
- 2023Medical SAM Adapter: Adapting Segment Anything Model for Medical Image Segmentationcited by 490
- 2022AMOS: A Large-Scale Abdominal Multi-Organ Benchmark for Versatile Medical Image Segmentationcited by 351
- 2020AbdomenCT-1K: Is Abdominal Organ Segmentation A Solved Problem?cited by 224
- 2023STU-Net: Scalable and Transferable Medical Image Segmentation Models Empowered by Large-Scale Supervised Pre-trainingcited by 100
- 2024AbdomenAtlas: A Large-Scale, Detailed-Annotated, & Multi-Center Dataset for Efficient Transfer Learning and Open Algorithmic Benchmarkingcited by 65
- 2023AbdomenAtlas-8K: Annotating 8,000 CT Volumes for Multi-Organ Segmentation in Three Weekscited by 52
- 2021Spatially Varying Label Smoothing: Capturing Uncertainty from Expert Annotationscited by 31
- 2025How Well Do Supervised 3D Models Transfer to Medical Imaging Tasks?cited by 19
- 2023Probabilistic Modeling of Inter- and Intra-observer Variability in Medical Image Segmentationcited by 17
- 2019Let's agree to disagree: learning highly debatable multirater labellingcited by 16
6 more
- 2018Imperfect Segmentation Labels: How Much Do They Matter?cited by 14
- 2023Robust T-Loss for Medical Image Segmentationcited by 14
- 2021Label noise in segmentation networks : mitigation must deal with biascited by 10
- 2020Robustness study of noisy annotation in deep learning based medical image segmentationcited by 9
- 2024Impact of imperfect annotations on CNN training and performance for instance segmentation and classification in digital pathologycited by 3
- 2019Quantitative Impact of Label Noise on the Quality of Segmentation of Brain Tumors on MRI scanscited by 2
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