mlsanityData to 14 Oct 2026

Towards Comprehensive and Prerequisite-Free Explainer for Graph Neural Networks

arXiv 2505.14005 ↗First posted 20 May 2025cs.LG cs.AIcited by 0

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Abstract (arXiv)

To enhance the reliability and credibility of graph neural networks (GNNs) and improve the transparency of their decision logic, a new field of explainability of GNNs (XGNN) has emerged. However, two major limitations severely degrade the performance and hinder the generalizability of existing XGNN methods: they (a) fail to capture the complete decision logic of GNNs across diverse distributions in the entire dataset's sample space, and (b) impose strict prerequisites on edge properties and GNN internal accessibility. To address these limitations, we propose OPEN, a novel cOmprehensive and Prerequisite-free Explainer for GNNs. OPEN, as the first work in the literature, can infer and partition the entire dataset's sample space into multiple environments, each containing graphs that follow a distinct distribution. OPEN further learns the decision logic of GNNs across different distributions by sampling subgraphs from each environment and analyzing their predictions, thus eliminating the need for strict prerequisites. Experimental results demonstrate that OPEN captures nearly complete decision logic of GNNs, outperforms state-of-the-art methods in fidelity while maintaining similar efficiency, and enhances robustness in real-world scenarios.

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References · 25

  1. 2017Graph Attention Networkscited by 8,923
  2. 2019Fast Graph Representation Learning with PyTorch Geometriccited by 2,434
  3. 2019GNNExplainer: Generating Explanations for Graph Neural Networkscited by 737
  4. 2020Parameterized Explainer for Graph Neural Networkcited by 426
  5. 2018GraphVAE: Towards Generation of Small Graphs Using Variational Autoencoderscited by 383
  6. 2021Invariance Principle Meets Information Bottleneck for Out-of-Distribution Generalizationcited by 220
  7. 2020XGNN: Towards Model-Level Explanations of Graph Neural Networkscited by 211
  8. 2020PGM-Explainer: Probabilistic Graphical Model Explanations for Graph Neural Networkscited by 211
  9. 2022Discovering Invariant Rationales for Graph Neural Networkscited by 188
  10. 2022Learning Causally Invariant Representations for Out-of-Distribution Generalization on Graphscited by 144
  11. 2022GOOD: A Graph Out-of-Distribution Benchmarkcited by 141
  12. 2021CF-GNNExplainer: Counterfactual Explanations for Graph Neural Networkscited by 119
13 more
  1. 2019Wasserstein Weisfeiler-Lehman Graph Kernelscited by 104
  2. 2022Evaluating Explainability for Graph Neural Networkscited by 87
  3. 2021Graph Representation Learning in Biomedicinecited by 80
  4. 2021DIG: A Turnkey Library for Diving into Graph Deep Learning Researchcited by 76
  5. 2022GraphFramEx: Towards Systematic Evaluation of Explainability Methods for Graph Neural Networkscited by 58
  6. 2018Mean-field theory of graph neural networks in graph partitioningcited by 16
  7. 2024How Interpretable Are Interpretable Graph Neural Networks?cited by 13
  8. 2023D4Explainer: In-Distribution GNN Explanations via Discrete Denoising Diffusioncited by 9
  9. 2024Few-Shot Causal Representation Learning for Out-of-Distribution Generalization on Heterogeneous Graphscited by 6
  10. 2024Adaptive Hypergraph Network for Trust Predictioncited by 4
  11. 2024Generating Robust Counterfactual Witnesses for Graph Neural Networkscited by 4
  12. 2023Domain Disentanglement with Interpolative Data Augmentation for Dual-Target Cross-Domain Recommendationcited by 3
  13. 2024Generating In-Distribution Proxy Graphs for Explaining Graph Neural Networkscited by 3

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