mlsanityData to 14 Oct 2026

DDPS: Discrete Diffusion Posterior Sampling for Paths in Layered Graphs

arXiv 2504.20754 ↗First posted 29 Apr 2025cs.LGcited by 4

On the map: Diffusion models → Flow matching, time series and science

Abstract (arXiv)

Diffusion models form an important class of generative models today, accounting for much of the state of the art in cutting edge AI research. While numerous extensions beyond image and video generation exist, few of such approaches address the issue of explicit constraints in the samples generated. In this paper, we study the problem of generating paths in a layered graph (a variant of a directed acyclic graph) using discrete diffusion models, while guaranteeing that our generated samples are indeed paths. Our approach utilizes a simple yet effective representation for paths which we call the padded adjacency-list matrix (PALM). In addition, we show how to effectively perform classifier guidance, which helps steer the sampled paths to specific preferred edges without any retraining of the diffusion model. Our preliminary results show that empirically, our method outperforms alternatives which do not explicitly account for path constraints.

Key facts. Cited by 4 papers in the map (data through 14 Oct 2026). Placed in Flow matching, time series and science, one of 14 directions in Diffusion models. Builds on 34 of its 45 references that are in the map. First posted on arXiv 29 Apr 2025.

Builds on

34 of 45 references.

Closest ancestors · 10

Same direction, newest first

  1. 2024Fine-Tuning Discrete Diffusion Models via Reward Optimization with Applications to DNA and Protein Design17 Oct
  2. 2024Steering Masked Discrete Diffusion Models via Discrete Denoising Posterior Prediction10 Oct
  3. 2024Dirichlet Flow Matching with Applications to DNA Sequence Design8 Feb
  4. 2024Generative Flows on Discrete State-Spaces: Enabling Multimodal Flows with Applications to Protein Co-Design7 Feb
  5. 2023SwinGNN: Rethinking Permutation Invariance in Diffusion Models for Graph Generation4 Jul
  6. 2023Dirichlet Diffusion Score Model for Biological Sequence Generation18 May
  7. 2023SE(3) diffusion model with application to protein backbone generation5 Feb
  8. 2022DiGress: Discrete Denoising diffusion for graph generation29 Sep
  9. 2022GeoDiff: a Geometric Diffusion Model for Molecular Conformation Generation6 Mar
  10. 2020Permutation Invariant Graph Generation via Score-Based Generative Modeling2 Mar

Other references · 24

  1. 2019PyTorch: An Imperative Style, High-Performance Deep Learning Librarycited by 20,305
  2. 2015U-Net: Convolutional Networks for Biomedical Image Segmentationcited by 19,713
  3. 2020Score-Based Generative Modeling through Stochastic Differential Equationscited by 9,122
  4. 2021Diffusion Models Beat GANs on Image Synthesiscited by 8,255
  5. 2015Deep Unsupervised Learning using Nonequilibrium Thermodynamicscited by 7,058
  6. 2019Generative Modeling by Estimating Gradients of the Data Distributioncited by 4,101
  7. 2021GLIDE: Towards Photorealistic Image Generation and Editing with Text-Guided Diffusion Modelscited by 3,614
  8. 2021Structured Denoising Diffusion Models in Discrete State-Spacescited by 1,719
  9. 2022Diffusion-LM Improves Controllable Text Generationcited by 1,027
  10. 2023Discrete Diffusion Modeling by Estimating the Ratios of the Data Distributioncited by 745
  11. 2021Argmax Flows and Multinomial Diffusion: Learning Categorical Distributionscited by 574
  12. 2022A Continuous Time Framework for Discrete Denoising Modelscited by 451
12 more
  1. 2024Simple Guidance Mechanisms for Discrete Diffusion Modelscited by 155
  2. 2022Concrete Score Matching: Generalized Score Matching for Discrete Datacited by 148
  3. 2024Derivative-Free Guidance in Continuous and Discrete Diffusion Models with Soft Value-Based Decodingcited by 136
  4. 2024Unlocking Guidance for Discrete State-Space Diffusion and Flow Modelscited by 129
  5. 2025Inference-Time Alignment in Diffusion Models with Reward-Guided Generation: Tutorial and Reviewcited by 88
  6. 2023Protein Discovery with Discrete Walk-Jump Samplingcited by 38
  7. 2023Elucidating The Design Space of Classifier-Guided Diffusion Generationcited by 18
  8. 2024LTLDoG: Satisfying Temporally-Extended Symbolic Constraints for Safe Diffusion-based Planningcited by 16
  9. 2024Diffusion Meets Options: Hierarchical Generative Skill Composition for Temporally-Extended Taskscited by 7
  10. 2024Guided Discrete Diffusion for Electronic Health Record Generationcited by 5
  11. 2024Layered Graph Security Gamescited by 2
  12. 2024Contested Logistics: A Game-Theoretic Approachcited by 2

Built on by

Cited by year (2026 to 14 Oct)

Citing papers per year: 2025: 2; 2026: 2.

4 papers.

Similar, not cited

Close in wording, no citation either way

  1. 2025Graph Representation Learning with Diffusion Generative Models
  2. 2024Generative Modelling of Structurally Constrained Graphs
  3. 2026Discrete Diffusion for Large Graph Generation via Structural Candidate Restriction
  4. 2023Complex Preferences for Different Convergent Priors in Discrete Graph Diffusion
  5. 2023Autoregressive Diffusion Model for Graph Generation
  6. 2024An Overview of Diffusion Models: Applications, Guided Generation, Statistical Rates and Optimization
  7. 2024From Graph Diffusion to Graph Classification
  8. 2023Diffusion Probabilistic Models for Structured Node Classification