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Instance Migration Diffusion for Nuclear Instance Segmentation in Pathology

arXiv 2504.01577 ↗First posted 2 Apr 2025eess.IV cs.CVcited by 0

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Abstract (arXiv)

Nuclear instance segmentation plays a vital role in disease diagnosis within digital pathology. However, limited labeled data in pathological images restricts the overall performance of nuclear instance segmentation. To tackle this challenge, we propose a novel data augmentation framework Instance Migration Diffusion Model (IM-Diffusion), IM-Diffusion designed to generate more varied pathological images by constructing diverse nuclear layouts and internuclear spatial relationships. In detail, we introduce a Nuclear Migration Module (NMM) which constructs diverse nuclear layouts by simulating the process of nuclear migration. Building on this, we further present an Internuclear-regions Inpainting Module (IIM) to generate diverse internuclear spatial relationships by structure-aware inpainting. On the basis of the above, IM-Diffusion generates more diverse pathological images with different layouts and internuclear spatial relationships, thereby facilitating downstream tasks. Evaluation on the CoNSeP and GLySAC datasets demonstrate that the images generated by IM-Diffusion effectively enhance overall instance segmentation performance. Code will be made public later.

Key facts. No citing papers in the map yet (data through 7 Oct 2026). Builds on 15 of its 28 references that are in the map. First posted on arXiv 2 Apr 2025.

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15 of 28 references.

References · 15

  1. 2020Denoising Diffusion Probabilistic Modelscited by 20,851
  2. 2015U-Net: Convolutional Networks for Biomedical Image Segmentationcited by 19,604
  3. 2023Segment Anythingcited by 8,158
  4. 2018HoVer-Net: Simultaneous Segmentation and Classification of Nuclei in Multi-Tissue Histology Imagescited by 387
  5. 2022SmartBrush: Text and Shape Guided Object Inpainting with Diffusion Modelcited by 276
  6. 2022Semantic Image Synthesis via Diffusion Modelscited by 131
  7. 2023Diffusion-based Data Augmentation for Nuclei Image Segmentationcited by 31
  8. 2023DiffMix: Diffusion Model-based Data Synthesis for Nuclei Segmentation and Classification in Imbalanced Pathology Image Datasetscited by 28
  9. 2023Unleashing the Power of Prompt-driven Nucleus Instance Segmentationcited by 19
  10. 2023NASDM: Nuclei-Aware Semantic Histopathology Image Generation Using Diffusion Modelscited by 18
  11. 2022Which Pixel to Annotate: a Label-Efficient Nuclei Segmentation Frameworkcited by 14
  12. 2024Controllable and Efficient Multi-Class Pathology Nuclei Data Augmentation using Text-Conditioned Diffusion Modelscited by 8
3 more
  1. 2023Topology-Guided Multi-Class Cell Context Generation for Digital Pathologycited by 7
  2. 2022SynCLay: Interactive Synthesis of Histology Images from Bespoke Cellular Layoutscited by 6
  3. 2020Reflection-mode virtual histology using photoacoustic remote sensing microscopycited by 2

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  1. 2024NucleiMix: Realistic Data Augmentation for Nuclei Instance Segmentation
  2. 2025Graph Conditioned Diffusion for Controllable Histopathology Image Generation
  3. 2024Co-synthesis of Histopathology Nuclei Image-Label Pairs using a Context-Conditioned Joint Diffusion Model
  4. 2025PathSegDiff: Pathology Segmentation using Diffusion model representations
  5. 2025MSDM: Generating Task-Specific Pathology Images with a Multimodal Conditioned Diffusion Model for Cell and Nuclei Segmentation
  6. 2024Mask-guided cross-image attention for zero-shot in-silico histopathologic image generation with a diffusion model
  7. 2026Assessment of Conditional Diffusion Model for Synthetic Histopathology Image Generation
  8. 2026Diffusion Models in Medical Image Inpainting: Challenges, Solution Taxonomy, and Future Directions