FunduSAM: A Specialized Deep Learning Model for Enhanced Optic Disc and Cup Segmentation in Fundus Images
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Abstract (arXiv)
The Segment Anything Model (SAM) has gained popularity as a versatile image segmentation method, thanks to its strong generalization capabilities across various domains. However, when applied to optic disc (OD) and optic cup (OC) segmentation tasks, SAM encounters challenges due to the complex structures, low contrast, and blurred boundaries typical of fundus images, leading to suboptimal performance. To overcome these challenges, we introduce a novel model, FunduSAM, which incorporates several Adapters into SAM to create a deep network specifically designed for OD and OC segmentation. The FunduSAM utilizes Adapter into each transformer block after encoder for parameter fine-tuning (PEFT). It enhances SAM's feature extraction capabilities by designing a Convolutional Block Attention Module (CBAM), addressing issues related to blurred boundaries and low contrast. Given the unique requirements of OD and OC segmentation, polar transformation is used to convert the original fundus OD images into a format better suited for training and evaluating FunduSAM. A joint loss is used to achieve structure preservation between the OD and OC, while accurate segmentation. Extensive experiments on the REFUGE dataset, comprising 1,200 fundus images, demonstrate the superior performance of FunduSAM compared to five mainstream approaches.
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References · 22
- 2015U-Net: Convolutional Networks for Biomedical Image Segmentationcited by 19,713
- 2021LoRA: Low-Rank Adaptation of Large Language Modelscited by 14,380
- 2023Segment Anythingcited by 8,234
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- 2016DeepLab: Semantic Image Segmentation with Deep Convolutional Nets, Atrous Convolution, and Fully Connected CRFscited by 3,241
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- 2016V-Net: Fully Convolutional Neural Networks for Volumetric Medical Image Segmentationcited by 2,292
- 2021TransUNet: Transformers Make Strong Encoders for Medical Image Segmentationcited by 1,558
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- 2022Swin UNETR: Swin Transformers for Semantic Segmentation of Brain Tumors in MRI Imagescited by 830
- 2022AdaptFormer: Adapting Vision Transformers for Scalable Visual Recognitioncited by 719
- 2023Medical SAM Adapter: Adapting Segment Anything Model for Medical Image Segmentationcited by 490
- 2020Parameter-Efficient Transfer Learning with Diff Pruningcited by 352
- 2017Road Extraction by Deep Residual U-Netcited by 333
- 2023Segment Anything in Medical Imagescited by 227
- 2022Parameter-efficient Model Adaptation for Vision Transformerscited by 81
- 2018Joint Optic Disc and Cup Segmentation Based on Multi-label Deep Network and Polar Transformationcited by 73
- 2023How to Efficiently Adapt Large Segmentation Model(SAM) to Medical Imagescited by 53
- 2022REFUGE2 Challenge: A Treasure Trove for Multi-Dimension Analysis and Evaluation in Glaucoma Screeningcited by 38
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