Med-PU: Point Cloud Upsampling for High-Fidelity 3D Medical Shape Reconstruction
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Abstract (arXiv)
High-fidelity 3D anatomical reconstruction is a prerequisite for downstream clinical tasks such as preoperative planning, radiotherapy target delineation, and orthopedic implant design. We present Med-PU, a knowledge-driven framework that integrates volumetric medical image segmentation with point cloud upsampling for accurate pelvic shape reconstruction. Unlike landmark- or PCA-based statistical shape models, Med-PU learns an implicit anatomical prior directly from large-scale 3D shape data, enabling dense completion and refinement from sparse segmentation-derived point sets. The pipeline couples SAM-Med3D-based voxel segmentation, point extraction, deep upsampling, and surface reconstruction, yielding smooth and topologically consistent meshes. We evaluate Med-PU on pelvic CT datasets (MedShapePelvic for training and Pelvic1k for validation), benchmarking against state-of-the-art upsampling methods using comprehensive geometry and surface metrics. Med-PU consistently improves surface quality and anatomical fidelity while reducing artifacts, demonstrating robustness across input densities. Although validated on the pelvis, the approach is anatomy-agnostic and applicable to other skeletal regions and organs. These results suggest Med-PU as a practical, generalizable tool to bridge segmentation outputs and clinically usable 3D models.
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References · 26
- 2015U-Net: Convolutional Networks for Biomedical Image Segmentationcited by 19,604
- 2023Segment Anythingcited by 8,158
- 2016PointNet: Deep Learning on Point Sets for 3D Classification and Segmentationcited by 5,223
- 2017PointNet++: Deep Hierarchical Feature Learning on Point Sets in a Metric Spacecited by 4,384
- 2021TransUNet: Transformers Make Strong Encoders for Medical Image Segmentationcited by 1,552
- 2020Point Transformercited by 1,462
- 2018PCN: Point Completion Networkcited by 382
- 2024VM-UNet: Vision Mamba UNet for Medical Image Segmentationcited by 286
- 2023Segment Anything in Medical Imagescited by 226
- 2018PU-Net: Point Cloud Upsampling Networkcited by 208
- 2018Patch-based Progressive 3D Point Set Upsamplingcited by 101
- 2023SAM-Med3D: Towards General-purpose Segmentation Models for Volumetric Medical Imagescited by 101
14 more
- 2019PU-GCN: Point Cloud Upsampling using Graph Convolutional Networkscited by 100
- 2022Neural Dual Contouringcited by 71
- 2020Deep Learning to Segment Pelvic Bones: Large-scale CT Datasets and Baseline Modelscited by 45
- 2023Grad-PU: Arbitrary-Scale Point Cloud Upsampling via Gradient Descent with Learned Distance Functionscited by 43
- 2023MedShapeNet -- A Large-Scale Dataset of 3D Medical Shapes for Computer Visioncited by 31
- 2021ASFM-Net: Asymmetrical Siamese Feature Matching Network for Point Completioncited by 28
- 2024TetSphere Splatting: Representing High-Quality Geometry with Lagrangian Volumetric Meshescited by 20
- 2022Point Cloud Upsampling via Cascaded Refinement Networkcited by 14
- 2023Can point cloud networks learn statistical shape models of anatomies?cited by 9
- 2021A Point Cloud Generative Model via Tree-Structured Graph Convolutions for 3D Brain Shape Reconstructioncited by 8
- 2024Loss Distillation via Gradient Matching for Point Cloud Completion with Weighted Chamfer Distancecited by 4
- 2023Multi-objective point cloud autoencoders for explainable myocardial infarction predictioncited by 3
- 2024Rethinking Data Input for Point Cloud Upsamplingcited by 2
- 2025Representation Learning of Point Cloud Upsampling in Global and Local Inputscited by 1
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