mlsanityData to 7 Oct 2026

RadGPT: Constructing 3D Image-Text Tumor Datasets

arXiv 2501.04678 ↗First posted 8 Jan 2025eess.IV cs.CVcited by 34

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Abstract (arXiv)

Cancers identified in CT scans are usually accompanied by detailed radiology reports, but publicly available CT datasets often lack these essential reports. This absence limits their usefulness for developing accurate report generation AI. To address this gap, we present AbdomenAtlas 3.0, the first public, high-quality abdominal CT dataset with detailed, expert-reviewed radiology reports. All reports are paired with per-voxel masks and they describe liver, kidney and pancreatic tumors. AbdomenAtlas 3.0 has 9,262 triplets of CT, mask and report--3,955 with tumors. These CT scans come from 17 public datasets. Besides creating the reports for these datasets, we expanded their number of tumor masks by 4.2x, identifying 3,011 new tumor cases. Notably, the reports in AbdomenAtlas 3.0 are more standardized, and generated faster than traditional human-made reports. They provide details like tumor size, location, attenuation and surgical resectability. These reports were created by 12 board-certified radiologists using our proposed RadGPT, a novel framework that converted radiologist-revised tumor segmentation masks into structured and narrative reports. Besides being a dataset creation tool, RadGPT can also become a fully-automatic, segmentation-assisted report generation method. We benchmarked this method and 5 state-of-the-art report generation vision-language models. Our results show that segmentation strongly improves tumor detection in AI-made reports.

Key facts. Cited by 34 papers in the map (data through 7 Oct 2026). Builds on 32 of its 94 references that are in the map. First posted on arXiv 8 Jan 2025.

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32 of 94 references.

References · 32

  1. 2021Learning Transferable Visual Models From Natural Language Supervisioncited by 33,456
  2. 2024The Llama 3 Herd of Modelscited by 14,192
  3. 2019CheXpert: A Large Chest Radiograph Dataset with Uncertainty Labels and Expert Comparisoncited by 1,410
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  5. 2017ChestX-ray8: Hospital-scale Chest X-ray Database and Benchmarks on Weakly-Supervised Classification and Localization of Common Thorax Diseasescited by 969
  6. 2021The Medical Segmentation Decathloncited by 620
  7. 2023BiomedCLIP: a multimodal biomedical foundation model pretrained from fifteen million scientific image-text pairscited by 506
  8. 2019The Liver Tumor Segmentation Benchmark (LiTS)cited by 504
  9. 2020Generating Radiology Reports via Memory-driven Transformercited by 363
  10. 2022AMOS: A Large-Scale Abdominal Multi-Organ Benchmark for Versatile Medical Image Segmentationcited by 347
  11. 2023Towards Generalist Biomedical AIcited by 286
  12. 2023CLIP-Driven Universal Model for Organ Segmentation and Tumor Detectioncited by 224
20 more
  1. 2020AbdomenCT-1K: Is Abdominal Organ Segmentation A Solved Problem?cited by 222
  2. 2023BiomedGPT: A Generalist Vision-Language Foundation Model for Diverse Biomedical Taskscited by 201
  3. 2023Towards Generalist Foundation Model for Radiology by Leveraging Web-scale 2D&3D Medical Datacited by 176
  4. 2019The KiTS19 Challenge Data: 300 Kidney Tumor Cases with Clinical Context, CT Semantic Segmentations, and Surgical Outcomescited by 168
  5. 2015DeepOrgan: Multi-level Deep Convolutional Networks for Automated Pancreas Segmentationcited by 158
  6. 2024M3D: Advancing 3D Medical Image Analysis with Multi-Modal Large Language Modelscited by 154
  7. 2024MAIRA-2: Grounded Radiology Report Generationcited by 140
  8. 2018TieNet: Text-Image Embedding Network for Common Thorax Disease Classification and Reporting in Chest X-rayscited by 139
  9. 2024CT2Rep: Automated Radiology Report Generation for 3D Medical Imagingcited by 96
  10. 2023MAIRA-1: A specialised large multimodal model for radiology report generationcited by 72
  11. 2024Towards Generalizable Tumor Synthesiscited by 65
  12. 2024AbdomenAtlas: A Large-Scale, Detailed-Annotated, & Multi-Center Dataset for Efficient Transfer Learning and Open Algorithmic Benchmarkingcited by 64
  13. 2023ELIXR: Towards a general purpose X-ray artificial intelligence system through alignment of large language models and radiology vision encoderscited by 49
  14. 2024MedImageInsight: An Open-Source Embedding Model for General Domain Medical Imagingcited by 45
  15. 2023MedSyn: Text-guided Anatomy-aware Synthesis of High-Fidelity 3D CT Imagescited by 41
  16. 2024Universal and Extensible Language-Vision Models for Organ Segmentation and Tumor Detection from Abdominal Computed Tomographycited by 31
  17. 2024Touchstone Benchmark: Are We on the Right Way for Evaluating AI Algorithms for Medical Segmentation?cited by 31
  18. 2022Improving deep neural network generalization and robustness to background bias via layer-wise relevance propagation optimizationcited by 25
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  20. 2024Analyzing Tumors by Synthesiscited by 11

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Cited by year (2026 to 7 Oct)

Citing papers per year: 2025: 17; 2026: 17.

34 papers.

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  1. 2025MedDINOv3: How to adapt vision foundation models for medical image segmentation?cited by 25
  2. 2025ReXGroundingCT: A 3D Chest CT Dataset for Segmentation of Findings from Free-Text Reportscited by 16
  3. 2025PanTS: The Pancreatic Tumor Segmentation Datasetcited by 15
  4. 2025Are Vision Language Models Ready for Clinical Diagnosis? A 3D Medical Benchmark for Tumor-centric Visual Question Answeringcited by 14
  5. 2025Scaling Tumor Segmentation: Best Lessons from Real and Synthetic Datacited by 13
  6. 2025Learning Segmentation from Radiology Reportscited by 11
  7. 2026OmniCT: Towards a Unified Slice-Volume LVLM for Comprehensive CT Analysiscited by 9
  8. 2025Scaling Artificial Intelligence for Multi-Tumor Early Detection with More Reports, Fewer Maskscited by 8
  9. 2025Ophiuchus: Incentivizing Tool-augmented "Think with Images" for Joint Medical Segmentation, Understanding and Reasoningcited by 8
  10. 2025Region-Aware Multimodal Large Language Model via SlowFast Tokenization and Pseudo-Mask Guidance for 3D CT Report Generationcited by 6
  11. 2025PET2Rep: Towards Vision-Language Model-Drived Automated Radiology Report Generation for Positron Emission Tomographycited by 6
  12. 2026U-VLM: Hierarchical Vision Language Modeling for Report Generationcited by 4
22 more
  1. 2026RadThinking: A Dataset for Longitudinal Clinical Reasoning in Radiologycited by 4
  2. 2025See More, Change Less: Anatomy-Aware Diffusion for Contrast Enhancementcited by 3
  3. 2025Domain Specific Benchmarks for Evaluating Multimodal Large Language Modelscited by 2
  4. 2025Auditing Significance, Metric Choice, and Demographic Fairness in Medical AI Challengescited by 2
  5. 2025Medal S: Spatio-Textual Prompt Model for Medical Segmentationcited by 1
  6. 2026Glance and Focus Reinforcement for Pan-cancer Screeningcited by 1
  7. 2026BTReport: A Framework for Brain Tumor Radiology Report Generation with Clinically Relevant Featurescited by 1
  8. 2026GLeVE: Graph-Guided Lesion Grounding with Proposal Verification in 3D CTcited by 1
  9. 2026MRI2Rep: Autoregressive Structured Report Generation for 3D Liver MRIcited by 1
  10. 2026The Path to Self-Evolving Clinical Systems: Scaling Medical Agents from Assistance to Autonomycited by 1
  11. 2026RadSight: Towards Perceptually Reliable Multimodal Radiology Image Understandingcited by 1
  12. 2025ShapeKitcited by 0
  13. 2025μ2Tokenizer: Differentiable Multi-Scale Multi-Modal Tokenizer for Radiology Report Generationcited by 0
  14. 2025MedVision: Benchmarking Quantitative Medical Image Analysiscited by 0
  15. 2026A Generalist Foundation Model for Total-body PET/CT Enables Diagnostic Reporting and System-wide Metabolic Profilingcited by 0
  16. 2026PHASOR: Anatomy- and Phase-Consistent Volumetric Diffusion for CT Virtual Contrast Enhancementcited by 0
  17. 2026Beyond Masks: The Case for Medical Image Parsingcited by 0
  18. 2026Multi-Granularity 3D Kidney Lesion Characterization from CT Volumescited by 0
  19. 2026ReportMedSAM: Guiding Segmentation Through Radiology Reportscited by 0
  20. 2026Report Supervisioncited by 0
  21. 2026RT-Super: Learning Tumor Segmentation from Longitudinal Images and Reportscited by 0
  22. 2026Merlin Plus: A Large-Scale, Multi-Cancer, Image-Mask-Report Datasetcited by 0

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