UMambaAdj: Advancing GTV Segmentation for Head and Neck Cancer in MRI-Guided RT with UMamba and nnU-Net ResEnc Planner
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Abstract (arXiv)
Magnetic Resonance Imaging (MRI) plays a crucial role in MRI-guided adaptive radiotherapy for head and neck cancer (HNC) due to its superior soft-tissue contrast. However, accurately segmenting the gross tumor volume (GTV), which includes both the primary tumor (GTVp) and lymph nodes (GTVn), remains challenging. Recently, two deep learning segmentation innovations have shown great promise: UMamba, which effectively captures long-range dependencies, and the nnU-Net Residual Encoder (ResEnc), which enhances feature extraction through multistage residual blocks. In this study, we integrate these strengths into a novel approach, termed 'UMambaAdj'. Our proposed method was evaluated on the HNTS-MRG 2024 challenge test set using pre-RT T2-weighted MRI images, achieving an aggregated Dice Similarity Coefficient (DSCagg) of 0.751 for GTVp and 0.842 for GTVn, with a mean DSCagg of 0.796. This approach demonstrates potential for more precise tumor delineation in MRI-guided adaptive radiotherapy, ultimately improving treatment outcomes for HNC patients. Team: DCPT-Stine's group.
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References · 19
- 2020An Image is Worth 16x16 Words: Transformers for Image Recognition at Scalecited by 29,915
- 2015U-Net: Convolutional Networks for Biomedical Image Segmentationcited by 19,604
- 2023Mamba: Linear-Time Sequence Modeling with Selective State Spacescited by 4,616
- 2021Efficiently Modeling Long Sequences with Structured State Spacescited by 2,424
- 2021TransUNet: Transformers Make Strong Encoders for Medical Image Segmentationcited by 1,552
- 2024Transformers are SSMs: Generalized Models and Efficient Algorithms Through Structured State Space Dualitycited by 1,283
- 2021UNETR: Transformers for 3D Medical Image Segmentationcited by 954
- 2022Swin UNETR: Swin Transformers for Semantic Segmentation of Brain Tumors in MRI Imagescited by 823
- 2017Understanding the Effective Receptive Field in Deep Convolutional Neural Networkscited by 549
- 2024U-Mamba: Enhancing Long-range Dependency for Biomedical Image Segmentationcited by 412
- 2021A Survey of Transformerscited by 399
- 2024SegMamba: Long-range Sequential Modeling Mamba For 3D Medical Image Segmentationcited by 266
7 more
- 2024nnU-Net Revisited: A Call for Rigorous Validation in 3D Medical Image Segmentationcited by 235
- 2024Swin-UMamba: Mamba-based UNet with ImageNet-based pretrainingcited by 179
- 2024Mamba-UNet: UNet-Like Pure Visual Mamba for Medical Image Segmentationcited by 133
- 2024Visual Mamba: A Survey and New Outlookscited by 41
- 2024Computation-Efficient Era: A Comprehensive Survey of State Space Models in Medical Image Analysiscited by 14
- 2023SwinCross: Cross-modal Swin Transformer for Head-and-Neck Tumor Segmentation in PET/CT Imagescited by 5
- 2024Large Language Model-Augmented Auto-Delineation of Treatment Target Volume in Radiation Therapycited by 1
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