Graph Edit Distance with General Costs Using Neural Set Divergence
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Abstract (arXiv)
Graph Edit Distance (GED) measures the (dis-)similarity between two given graphs, in terms of the minimum-cost edit sequence that transforms one graph to the other. However, the exact computation of GED is NP-Hard, which has recently motivated the design of neural methods for GED estimation. However, they do not explicitly account for edit operations with different costs. In response, we propose GRAPHEDX, a neural GED estimator that can work with general costs specified for the four edit operations, viz., edge deletion, edge addition, node deletion and node addition. We first present GED as a quadratic assignment problem (QAP) that incorporates these four costs. Then, we represent each graph as a set of node and edge embeddings and use them to design a family of neural set divergence surrogates. We replace the QAP terms corresponding to each operation with their surrogates. Computing such neural set divergence require aligning nodes and edges of the two graphs. We learn these alignments using a Gumbel-Sinkhorn permutation generator, additionally ensuring that the node and edge alignments are consistent with each other. Moreover, these alignments are cognizant of both the presence and absence of edges between node-pairs. Experiments on several datasets, under a variety of edit cost settings, show that GRAPHEDX consistently outperforms state-of-the-art methods and heuristics in terms of prediction error.
Key facts. Cited by 11 papers in the map (data through 14 Oct 2026). Builds on 24 of its 62 references that are in the map. First posted on arXiv 26 Sep 2024.
Builds on
24 of 62 references.
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12 more
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Citing papers per year: 2025: 6; 2026: 5.
11 papers.
- 2025The quest for the GRAph Level autoEncoder (GRALE)cited by 8
- 2025STED and Consistency Scoring: A Framework for Evaluating LLM Structured Output Reliabilitycited by 5
- 2025Rethinking Flexible Graph Similarity Computation: One-step Alignment with Global Guidancecited by 1
- 2025GEDAN: Learning the Edit Costs for Graph Edit Distancecited by 1
- 2026Instruction set for the representation of graphscited by 1
- 2025HeGMN: Heterogeneous Graph Matching Network for Learning Graph Similaritycited by 0
- 2025Contextual Tokenization for Graph Inverted Indicescited by 0
- 2026Towards Metric-Faithful Neural Graph Matchingcited by 0
- 2026Agents for Experiments, Experiments for Agents: A Design Grammar for AI-Enabled Experimental Sciencecited by 0
- 2026Alignment-Guided Largest Table Overlap Size Estimationcited by 0
- 2026Revisiting the Generalization of Neural Graph Edit Distance Modelscited by 0
- 2026Revisiting the Generalization of Neural Graph Edit Distance Models3 Oct 2026
- 2026Alignment-Guided Largest Table Overlap Size Estimation3 Jul 2026
- 2026Agents for Experiments, Experiments for Agents: A Design Grammar for AI-Enabled Experimental Science18 May 2026
- 2026Towards Metric-Faithful Neural Graph Matching7 May 2026
- 2026Instruction set for the representation of graphs11 Mar 2026
- 2025STED and Consistency Scoring: A Framework for Evaluating LLM Structured Output Reliability27 Nov 2025
- 2025Contextual Tokenization for Graph Inverted Indices26 Oct 2025
- 2025GEDAN: Learning the Edit Costs for Graph Edit Distance5 Aug 2025
- 2025The quest for the GRAph Level autoEncoder (GRALE)28 May 2025
- 2025Rethinking Flexible Graph Similarity Computation: One-step Alignment with Global Guidance9 Apr 2025
- 2025HeGMN: Heterogeneous Graph Matching Network for Learning Graph Similarity11 Mar 2025