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A Unified Deep Learning Framework for Motion Correction in Medical Imaging

arXiv 2409.14204 ↗First posted 21 Sep 2024eess.IV cs.CVcited by 0

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Abstract (arXiv)

Deep learning has shown significant value in medical image registration for motion correction; however, current techniques are either limited by the type and range of motion they can handle or require iterative inference and/or retraining for new imaging data. To address these limitations, we introduce UniMo, a Unified Motion Correction framework that uses deep neural networks to correct various types of motion in medical imaging. UniMo uses an alternating optimization scheme with a unified loss function to train an integrated model of 1) an equivariant neural network for global rigid motion correction and 2) an encoder-decoder network for local deformations. It features a geometric deformation augmenter that 1) enhances the robustness of global motion correction by addressing local deformations, whether caused by non-rigid motion or geometric distortions, and 2) generates augmented data to improve training. As a hybrid model that uses both image intensities and shapes, UniMo is robust to appearance variations and generalizes to various imaging modalities without retraining. We trained and tested UniMo for motion tracking in fetal magnetic resonance imaging, which is challenging due to 1) both large rigid and non-rigid motion and 2) large variations in image appearance. We then tested the trained model, without retraining, on three public datasets: MedMNIST, lung CT, and BraTS. UniMo surpassed existing motion correction methods in accuracy and, notably, enabled one-time training on a single modality while maintaining high stability and adaptability across multiple unseen imaging datasets. By offering a unified solution to motion correction, UniMo marks a significant advance in challenging applications with a mixture of bulk motion and local deformations. Code is available at https://github.com/IntelligentImaging/UNIMO

Key facts. No citing papers in the map yet (data through 14 Oct 2026). Builds on 33 of its 151 references that are in the map. First posted on arXiv 21 Sep 2024.

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References · 33

  1. 2021MedMNIST v2 -- A large-scale lightweight benchmark for 2D and 3D biomedical image classificationcited by 690
  2. 2018VoxelMorph: A Learning Framework for Deformable Medical Image Registrationcited by 662
  3. 2021The RSNA-ASNR-MICCAI BraTS 2021 Benchmark on Brain Tumor Segmentation and Radiogenomic Classificationcited by 518
  4. 2017A Deep Cascade of Convolutional Neural Networks for Dynamic MR Image Reconstructioncited by 232
  5. 2020MedMNIST Classification Decathlon: A Lightweight AutoML Benchmark for Medical Image Analysiscited by 206
  6. 2021DiffuseMorph: Unsupervised Deformable Image Registration Using Diffusion Modelcited by 58
  7. 2024Spherical Linear Interpolation and Text-Anchoring for Zero-shot Composed Image Retrievalcited by 44
  8. 2018Real-time Deep Pose Estimation with Geodesic Loss for Image-to-Template Rigid Registrationcited by 40
  9. 2022Neural Implicit k-Space for Binning-free Non-Cartesian Cardiac MR Imagingcited by 35
  10. 2022SVoRT: Iterative Transformer for Slice-to-Volume Registration in Fetal Brain MRIcited by 26
  11. 2023A Robust and Interpretable Deep Learning Framework for Multi-modal Registration via Keypointscited by 25
  12. 2019Deformable Slice-to-Volume Registration for Motion Correction in Fetal Body MRIcited by 23
21 more
  1. 2021Joint Progressive and Coarse-to-fine Registration of Brain MRI via Deformation Field Integration and Non-Rigid Feature Fusioncited by 22
  2. 2017Slice-to-volume medical image registration: a surveycited by 21
  3. 2023Deep Learning for Retrospective Motion Correction in MRI: A Comprehensive Reviewcited by 18
  4. 2021Equivariant Filters for Efficient Tracking in 3D Imagingcited by 17
  5. 2020Cine Cardiac MRI Motion Artifact Reduction Using a Recurrent Neural Networkcited by 12
  6. 2019Deep Predictive Motion Tracking in Magnetic Resonance Imaging: Application to Fetal Imagingcited by 10
  7. 2020Joint Frequency and Image Space Learning for MRI Reconstruction and Analysiscited by 10
  8. 2023ICoNIK: Generating Respiratory-Resolved Abdominal MR Reconstructions Using Neural Implicit Representations in k-Spacecited by 10
  9. 2023SE(3)-Equivariant and Noise-Invariant 3D Rigid Motion Tracking in Brain MRIcited by 10
  10. 2016PVR: Patch-to-Volume Reconstruction for Large Area Motion Correction of Fetal MRIcited by 9
  11. 2024BrainMorph: A Foundational Keypoint Model for Robust and Flexible Brain MRI Registrationcited by 9
  12. 2020Retrospective Motion Correction of MR Images using Prior-Assisted Deep Learningcited by 8
  13. 2024SlerpFace: Face Template Protection via Spherical Linear Interpolationcited by 8
  14. 2023Fetal-BET: Brain Extraction Tool for Fetal MRIcited by 7
  15. 2022Autofocusing+: Noise-Resilient Motion Correction in Magnetic Resonance Imagingcited by 5
  16. 2024HAITCH: A Framework for Distortion and Motion Correction in Fetal Multi-Shell Diffusion-Weighted MRIcited by 5
  17. 2022Motion Correction and Volumetric Reconstruction for Fetal Functional Magnetic Resonance Imaging Datacited by 4
  18. 2023MetaMorph: Learning Metamorphic Image Transformation With Appearance Changescited by 4
  19. 2024Physics-Informed Deep Learning for Motion-Corrected Reconstruction of Quantitative Brain MRIcited by 4
  20. 2023Beat Pilot Tone (BPT): Simultaneous MR Imaging and RF Motion Sensing at Arbitrary Frequenciescited by 2
  21. 2024SpaER: Learning Spatio-temporal Equivariant Representations for Fetal Brain Motion Trackingcited by 2

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