Generative artificial intelligence for computational chemistry: a roadmap to predicting emergent phenomena
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Abstract (arXiv)
The recent surge in Generative Artificial Intelligence (AI) has introduced exciting possibilities for computational chemistry. Generative AI methods have made significant progress in sampling molecular structures across chemical species, developing force fields, and speeding up simulations. This Perspective offers a structured overview, beginning with the fundamental theoretical concepts in both Generative AI and computational chemistry. It then covers widely used Generative AI methods, including autoencoders, generative adversarial networks, reinforcement learning, flow models and language models, and highlights their selected applications in diverse areas including force field development, and protein/RNA structure prediction. A key focus is on the challenges these methods face before they become truly predictive, particularly in predicting emergent chemical phenomena. We believe that the ultimate goal of a simulation method or theory is to predict phenomena not seen before, and that Generative AI should be subject to these same standards before it is deemed useful for chemistry. We suggest that to overcome these challenges, future AI models need to integrate core chemical principles, especially from statistical mechanics.
Key facts. Cited by 3 papers in the map (data through 14 Oct 2026). Builds on 7 of its 24 references that are in the map. First posted on arXiv 4 Sep 2024.
Builds on
7 of 24 references.
References · 7
- 2022Flow Matching for Generative Modelingcited by 5,702
- 2018Graph Convolutional Policy Network for Goal-Directed Molecular Graph Generationcited by 364
- 2019Machine learning for molecular simulationcited by 110
- 2022Machine Learning Coarse-Grained Potentials of Protein Thermodynamicscited by 37
- 2021Reinforcement learning of rare diffusive dynamicscited by 15
- 2023Towards Combinatorial Generalization for Catalysts: A Kohn-Sham Charge-Density Approachcited by 5
- 2023Investigating the Behavior of Diffusion Models for Accelerating Electronic Structure Calculationscited by 1
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Citing papers per year: 2024: 2; 2025: 1.
3 papers.
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- 2025Unraveling the Potential of Diffusion Models in Small Molecule Generation
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- 2026AtomComposer: Discovering Chemical Space from First Principles with Reinforcement Learning
- 2024Physics-informed generative model for drug-like molecule conformers
- 2023Navigating the Design Space of Equivariant Diffusion-Based Generative Models for De Novo 3D Molecule Generation