Does Biomedical Training Lead to Better Medical Performance?
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Abstract (arXiv)
Large Language Models (LLMs) are expected to significantly contribute to patient care, diagnostics, and administrative processes. Emerging biomedical LLMs aim to address healthcare-specific challenges, including privacy demands and computational constraints. Assessing the models' suitability for this sensitive application area is of the utmost importance. However, biomedical training has not been systematically evaluated on medical tasks. This study investigates the effect of biomedical training in the context of six practical medical tasks evaluating 25 models. In contrast to previous evaluations, our results reveal a performance decline in nine out of twelve biomedical models after fine-tuning, particularly on tasks involving hallucinations, ICD10 coding, and instruction adherence. General-domain models like Meta-Llama-3.1-70B-Instruct outperformed their biomedical counterparts, indicating a trade-off between domain-specific fine-tuning and general medical task performance. We open-source all evaluation scripts and datasets at https://github.com/TIO-IKIM/CLUE to support further research in this critical area.
Key facts. Cited by 13 papers in the map (data through 7 Oct 2026). Builds on 18 of its 44 references that are in the map. First posted on arXiv 5 Apr 2024.
Builds on
18 of 44 references.
References · 18
- 2023Llama 2: Open Foundation and Fine-Tuned Chat Modelscited by 12,865
- 2023Direct Preference Optimization: Your Language Model is Secretly a Reward Modelcited by 7,916
- 2020Measuring Massive Multitask Language Understandingcited by 7,768
- 2022Large Language Models Encode Clinical Knowledgecited by 1,807
- 2019SuperGLUE: A Stickier Benchmark for General-Purpose Language Understanding Systemscited by 1,718
- 2020What Disease does this Patient Have? A Large-scale Open Domain Question Answering Dataset from Medical Examscited by 1,324
- 2019PubMedQA: A Dataset for Biomedical Research Question Answeringcited by 1,271
- 2019Publicly Available Clinical BERT Embeddingscited by 995
- 2023Language Models are Super Mario: Absorbing Abilities from Homologous Models as a Free Lunchcited by 679
- 2023Textbooks Are All You Need II: phi-1.5 technical reportcited by 559
- 2023Zephyr: Direct Distillation of LM Alignmentcited by 498
- 2024BioMistral: A Collection of Open-Source Pretrained Large Language Models for Medical Domainscited by 299
6 more
- 2023MedAlpaca -- An Open-Source Collection of Medical Conversational AI Models and Training Datacited by 282
- 2019ScispaCy: Fast and Robust Models for Biomedical Natural Language Processingcited by 244
- 2018Lessons from Natural Language Inference in the Clinical Domaincited by 149
- 2024Benchmarking Large Language Models on Answering and Explaining Challenging Medical Questionscited by 106
- 2023BioMedGPT: Open Multimodal Generative Pre-trained Transformer for BioMedicinecited by 99
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Citing papers per year: 2024: 3; 2025: 7; 2026: 3.
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- 2024Biomedical Large Languages Models Seem not to be Superior to Generalist Models on Unseen Medical Datacited by 21
- 2025A Modular Approach for Clinical SLMs Driven by Synthetic Data with Pre-Instruction Tuning, Model Merging, and Clinical-Tasks Alignmentcited by 20
- 2025MedArabiQ: Benchmarking Large Language Models on Arabic Medical Taskscited by 15
- 2024MedConceptsQA: Open Source Medical Concepts QA Benchmarkcited by 6
- 2024Multi-Document Financial Question Answering using LLMscited by 6
- 2025On the Influence of Context Size and Model Choice in Retrieval-Augmented Generation Systemscited by 5
- 2025MedRiskEval: Medical Risk Evaluation Benchmark of Language Models, On the Importance of User Perspectives in Healthcare Settingscited by 2
- 2025Overview of the MEDIQA-OE 2025 Shared Task on Medical Order Extraction from Doctor-Patient Consultationscited by 2
- 2026VERT: Reliable LLM Judges for Radiology Report Evaluationcited by 2
- 2025Towards Conditioning Clinical Text Generation for User Controlcited by 1
- 2026Beyond "I Don't Know": Evaluating LLM Self-Awareness in Discriminating Data and Model Uncertaintycited by 1
- 2025Investigating LLM Capabilities on Long Context Comprehension for Medical Question Answeringcited by 0
- 2026Employing General-Purpose and Biomedical Large Language Models with Advanced Prompt Engineering for Pharmacoepidemiologic Study Design20 Apr 2026
- 2026Beyond "I Don't Know": Evaluating LLM Self-Awareness in Discriminating Data and Model Uncertainty19 Apr 2026
- 2026VERT: Reliable LLM Judges for Radiology Report Evaluation3 Apr 2026
- 2025Overview of the MEDIQA-OE 2025 Shared Task on Medical Order Extraction from Doctor-Patient Consultations30 Oct 2025
- 2025Investigating LLM Capabilities on Long Context Comprehension for Medical Question Answering21 Oct 2025
- 2025MedRiskEval: Medical Risk Evaluation Benchmark of Language Models, On the Importance of User Perspectives in Healthcare Settings9 Jul 2025
- 2025A Modular Approach for Clinical SLMs Driven by Synthetic Data with Pre-Instruction Tuning, Model Merging, and Clinical-Tasks Alignment15 May 2025
- 2025MedArabiQ: Benchmarking Large Language Models on Arabic Medical Tasks6 May 2025
- 2025Towards Conditioning Clinical Text Generation for User Control24 Feb 2025
- 2025On the Influence of Context Size and Model Choice in Retrieval-Augmented Generation Systems20 Feb 2025
- 2024Multi-Document Financial Question Answering using LLMs8 Nov 2024
- 2024Biomedical Large Languages Models Seem not to be Superior to Generalist Models on Unseen Medical Data25 Aug 2024
1 more
- 2024MedConceptsQA: Open Source Medical Concepts QA Benchmark12 May 2024
- 2024Biomedical Large Languages Models Seem not to be Superior to Generalist Models on Unseen Medical Datacited by 21
- 2025MedArabiQ: Benchmarking Large Language Models on Arabic Medical Taskscited by 15
- 2024MedConceptsQA: Open Source Medical Concepts QA Benchmarkcited by 6
- 2024Multi-Document Financial Question Answering using LLMscited by 6
- 2025MedRiskEval: Medical Risk Evaluation Benchmark of Language Models, On the Importance of User Perspectives in Healthcare Settingscited by 2
- 2025Overview of the MEDIQA-OE 2025 Shared Task on Medical Order Extraction from Doctor-Patient Consultationscited by 2
- 2026VERT: Reliable LLM Judges for Radiology Report Evaluationcited by 2
- 2025Towards Conditioning Clinical Text Generation for User Controlcited by 1
- 2026Beyond "I Don't Know": Evaluating LLM Self-Awareness in Discriminating Data and Model Uncertaintycited by 1
- 2025Investigating LLM Capabilities on Long Context Comprehension for Medical Question Answeringcited by 0
- 2026Employing General-Purpose and Biomedical Large Language Models with Advanced Prompt Engineering for Pharmacoepidemiologic Study Designcited by 0
- 2026Employing General-Purpose and Biomedical Large Language Models with Advanced Prompt Engineering for Pharmacoepidemiologic Study Design20 Apr 2026
- 2026Beyond "I Don't Know": Evaluating LLM Self-Awareness in Discriminating Data and Model Uncertainty19 Apr 2026
- 2026VERT: Reliable LLM Judges for Radiology Report Evaluation3 Apr 2026
- 2025Overview of the MEDIQA-OE 2025 Shared Task on Medical Order Extraction from Doctor-Patient Consultations30 Oct 2025
- 2025Investigating LLM Capabilities on Long Context Comprehension for Medical Question Answering21 Oct 2025
- 2025MedRiskEval: Medical Risk Evaluation Benchmark of Language Models, On the Importance of User Perspectives in Healthcare Settings9 Jul 2025
- 2025MedArabiQ: Benchmarking Large Language Models on Arabic Medical Tasks6 May 2025
- 2025Towards Conditioning Clinical Text Generation for User Control24 Feb 2025
- 2024Multi-Document Financial Question Answering using LLMs8 Nov 2024
- 2024Biomedical Large Languages Models Seem not to be Superior to Generalist Models on Unseen Medical Data25 Aug 2024
- 2024MedConceptsQA: Open Source Medical Concepts QA Benchmark12 May 2024