Investigating LLM Capabilities on Long Context Comprehension for Medical Question Answering
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Abstract (arXiv)
This study is the first to investigate LLM comprehension capabilities over long-context (LC), clinically relevant medical Question Answering (QA) beyond MCQA. Our comprehensive approach considers a range of settings based on content inclusion of varying size and relevance, LLM models of different capabilities and a variety of datasets across task formulations. We reveal insights on model size effects and their limitations, underlying memorization issues and the benefits of reasoning models, while demonstrating the value and challenges of leveraging the full long patient's context. Importantly, we examine the effect of Retrieval Augmented Generation (RAG) on medical LC comprehension, showcasing best settings in single versus multi-document QA datasets. We shed light into some of the evaluation aspects using a multi-faceted approach uncovering common metric challenges. Our quantitative analysis reveals challenging cases where RAG excels while still showing limitations in cases requiring temporal reasoning.
Key facts. No citing papers in the map yet (data through 7 Oct 2026). Builds on 97 of its 127 references that are in the map. First posted on arXiv 21 Oct 2025.
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References · 97
- 2023GPT-4 Technical Reportcited by 18,132
- 2024The Llama 3 Herd of Modelscited by 14,192
- 2023Llama 2: Open Foundation and Fine-Tuned Chat Modelscited by 12,865
- 2020Retrieval-Augmented Generation for Knowledge-Intensive NLP Taskscited by 9,160
- 2020Measuring Massive Multitask Language Understandingcited by 7,768
- 2019BERTScore: Evaluating Text Generation with BERTcited by 5,462
- 2024Qwen2.5 Technical Reportcited by 4,713
- 2021RoFormer: Enhanced Transformer with Rotary Position Embeddingcited by 4,581
- 2024GPT-4o System Cardcited by 4,467
- 2023Lost in the Middle: How Language Models Use Long Contextscited by 3,383
- 2024Gemini 1.5: Unlocking multimodal understanding across millions of tokens of contextcited by 3,175
- 2023Efficient Streaming Language Models with Attention Sinkscited by 2,115
38 more
- 2023Self-RAG: Learning to Retrieve, Generate, and Critique through Self-Reflectioncited by 1,800
- 2023LongBench: A Bilingual, Multitask Benchmark for Long Context Understandingcited by 1,378
- 2020What Disease does this Patient Have? A Large-scale Open Domain Question Answering Dataset from Medical Examscited by 1,324
- 2021Improving language models by retrieving from trillions of tokenscited by 1,278
- 2019PubMedQA: A Dataset for Biomedical Research Question Answeringcited by 1,271
- 2024RULER: What's the Real Context Size of Your Long-Context Language Models?cited by 1,270
- 2022Text Embeddings by Weakly-Supervised Contrastive Pre-trainingcited by 1,216
- 2021Unsupervised Dense Information Retrieval with Contrastive Learningcited by 1,203
- 2025Qwen3 Embedding: Advancing Text Embedding and Reranking Through Foundation Modelscited by 1,175
- 2020ColBERT: Efficient and Effective Passage Search via Contextualized Late Interaction over BERTcited by 1,160
- 2024M3-Embedding: Multi-Linguality, Multi-Functionality, Multi-Granularity Text Embeddings Through Self-Knowledge Distillationcited by 1,050
- 2019Publicly Available Clinical BERT Embeddingscited by 995
- 2022Atlas: Few-shot Learning with Retrieval Augmented Language Modelscited by 940
- 2023Extending Context Window of Large Language Models via Positional Interpolationcited by 721
- 2023Capabilities of GPT-4 on Medical Challenge Problemscited by 630
- 2022MTEB: Massive Text Embedding Benchmarkcited by 623
- 2023YaRN: Efficient Context Window Extension of Large Language Modelscited by 584
- 2022MedMCQA : A Large-scale Multi-Subject Multi-Choice Dataset for Medical domain Question Answeringcited by 525
- 2024RAPTOR: Recursive Abstractive Processing for Tree-Organized Retrievalcited by 519
- 2024Prometheus 2: An Open Source Language Model Specialized in Evaluating Other Language Modelscited by 431
- 2020SPECTER: Document-level Representation Learning using Citation-informed Transformerscited by 426
- 2024LongBench v2: Towards Deeper Understanding and Reasoning on Realistic Long-context Multitaskscited by 367
- 2024∞Bench: Extending Long Context Evaluation Beyond 100K Tokenscited by 360
- 2023Adapting Language Models to Compress Contextscited by 350
- 2024Benchmarking Retrieval-Augmented Generation for Medicinecited by 326
- 2023MedAgents: Large Language Models as Collaborators for Zero-shot Medical Reasoningcited by 311
- 2023Effective Long-Context Scaling of Foundation Modelscited by 301
- 2023Improving Text Embeddings with Large Language Modelscited by 295
- 2024Long-context LLMs Struggle with Long In-context Learningcited by 285
- 2021SPLADE: Sparse Lexical and Expansion Model for First Stage Rankingcited by 283
- 2023LLMLingua: Compressing Prompts for Accelerated Inference of Large Language Modelscited by 279
- 2023MEDITRON-70B: Scaling Medical Pretraining for Large Language Modelscited by 272
- 2024HuatuoGPT-o1, Towards Medical Complex Reasoning with LLMscited by 257
- 2022GatorTron: A Large Clinical Language Model to Unlock Patient Information from Unstructured Electronic Health Recordscited by 238
- 2023LooGLE: Can Long-Context Language Models Understand Long Contexts?cited by 200
- 2022Can large language models reason about medical questions?cited by 194
- 2024InfLLM: Training-Free Long-Context Extrapolation for LLMs with an Efficient Context Memorycited by 192
- 2023MedCPT: Contrastive Pre-trained Transformers with Large-scale PubMed Search Logs for Zero-shot Biomedical Information Retrievalcited by 182
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