Overcoming Order in Autoregressive Graph Generation
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Abstract (arXiv)
Graph generation is a fundamental problem in various domains, including chemistry and social networks. Recent work has shown that molecular graph generation using recurrent neural networks (RNNs) is advantageous compared to traditional generative approaches which require converting continuous latent representations into graphs. One issue which arises when treating graph generation as sequential generation is the arbitrary order of the sequence which results from a particular choice of graph flattening method. In this work we propose using RNNs, taking into account the non-sequential nature of graphs by adding an Orderless Regularization (OLR) term that encourages the hidden state of the recurrent model to be invariant to different valid orderings present under the training distribution. We demonstrate that sequential graph generation models benefit from our proposed regularization scheme, especially when data is scarce. Our findings contribute to the growing body of research on graph generation and provide a valuable tool for various applications requiring the synthesis of realistic and diverse graph structures.
Key facts. Cited by 3 papers in the map (data through 14 Oct 2026). Builds on 55 of its 85 references that are in the map. First posted on arXiv 4 Feb 2024.
Builds on
55 of 85 references.
References · 55
- 2017Graph Attention Networkscited by 8,923
- 2021Evaluating Large Language Models Trained on Codecited by 8,320
- 2015Deep Unsupervised Learning using Nonequilibrium Thermodynamicscited by 7,058
- 2022Generative Adversarial Networkscited by 5,627
- 2014Empirical Evaluation of Gated Recurrent Neural Networks on Sequence Modelingcited by 2,367
- 2018Graph Neural Networks: A Review of Methods and Applicationscited by 1,576
- 2017Deep Setscited by 1,421
- 2016Automatic chemical design using a data-driven continuous representation of moleculescited by 765
- 2022Equivariant Diffusion for Molecule Generation in 3Dcited by 677
- 2018Junction Tree Variational Autoencoder for Molecular Graph Generationcited by 652
- 2017Scene Graph Generation by Iterative Message Passingcited by 462
- 2018GraphRNN: Generating Realistic Graphs with Deep Auto-regressive Modelscited by 413
38 more
- 2018MolGAN: An implicit generative model for small molecular graphscited by 393
- 2018GraphVAE: Towards Generation of Small Graphs Using Variational Autoencoderscited by 383
- 2018Graph Convolutional Policy Network for Goal-Directed Molecular Graph Generationcited by 364
- 2020GraphAF: a Flow-based Autoregressive Model for Molecular Graph Generationcited by 305
- 2018Molecular Sets (MOSES): A Benchmarking Platform for Molecular Generation Modelscited by 275
- 2015Order Matters: Sequence to sequence for setscited by 237
- 2019Efficient Graph Generation with Graph Recurrent Attention Networkscited by 234
- 2017Learning to Represent Programs with Graphscited by 220
- 2018Fr'echet ChemNet Distance: A metric for generative models for molecules in drug discoverycited by 194
- 2020MoFlow: An Invertible Flow Model for Generating Molecular Graphscited by 185
- 2018GaAN: Gated Attention Networks for Learning on Large and Spatiotemporal Graphscited by 165
- 2021E(n) Equivariant Normalizing Flowscited by 165
- 2019GraphNVP: An Invertible Flow Model for Generating Molecular Graphscited by 116
- 2018Syntax-Directed Variational Autoencoder for Structured Datacited by 103
- 2018Janossy Pooling: Learning Deep Permutation-Invariant Functions for Variable-Size Inputscited by 98
- 2020A Systematic Survey on Deep Generative Models for Graph Generationcited by 94
- 2021Inverse design of 3d molecular structures with conditional generative neural networkscited by 93
- 2019MolecularRNN: Generating realistic molecular graphs with optimized propertiescited by 82
- 2018Constrained Generation of Semantically Valid Graphs via Regularizing Variational Autoencoderscited by 74
- 2018Molecular generative model based on conditional variational autoencoder for de novo molecular designcited by 73
- 2022A Survey on Deep Graph Generation: Methods and Applicationscited by 69
- 2021Keeping it Simple: Language Models can learn Complex Molecular Distributionscited by 68
- 2020GraphGen: A Scalable Approach to Domain-agnostic Labeled Graph Generationcited by 66
- 2018Generative Code Modeling with Graphscited by 60
- 2020Symmetry-Aware Actor-Critic for 3D Molecular Designcited by 55
- 2020Reinforcement Learning for Molecular Design Guided by Quantum Mechanicscited by 51
- 2018Mapping Images to Scene Graphs with Permutation-Invariant Structured Predictioncited by 44
- 2018Conditional molecular design with deep generative modelscited by 44
- 2021Order Matters: Probabilistic Modeling of Node Sequence for Graph Generationcited by 33
- 2017Application of generative autoencoder in de novo molecular designcited by 32
- 2018DEFactor: Differentiable Edge Factorization-based Probabilistic Graph Generationcited by 24
- 2020A Deep Generative Model for Fragment-Based Molecule Generationcited by 24
- 2020Interpretable Deep Graph Generation with Node-Edge Co-Disentanglementcited by 24
- 2019Graph Residual Flow for Molecular Graph Generationcited by 23
- 2020Edge-based sequential graph generation with recurrent neural networkscited by 16
- 2020Graph Deconvolutional Generationcited by 16
- 2022Interpretable Molecular Graph Generation via Monotonic Constraintscited by 15
- 2020Regularizing Towards Permutation Invariance in Recurrent Modelscited by 13
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