A graphon-signal analysis of graph neural networks
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Abstract (arXiv)
We present an approach for analyzing message passing graph neural networks (MPNNs) based on an extension of graphon analysis to a so called graphon-signal analysis. A MPNN is a function that takes a graph and a signal on the graph (a graph-signal) and returns some value. Since the input space of MPNNs is non-Euclidean, i.e., graphs can be of any size and topology, properties such as generalization are less well understood for MPNNs than for Euclidean neural networks. We claim that one important missing ingredient in past work is a meaningful notion of graph-signal similarity measure, that endows the space of inputs to MPNNs with a regular structure. We present such a similarity measure, called the graphon-signal cut distance, which makes the space of all graph-signals a dense subset of a compact metric space -- the graphon-signal space. Informally, two deterministic graph-signals are close in cut distance if they ``look like'' they were sampled from the same random graph-signal model. Hence, our cut distance is a natural notion of graph-signal similarity, which allows comparing any pair of graph-signals of any size and topology. We prove that MPNNs are Lipschitz continuous functions over the graphon-signal metric space. We then give two applications of this result: 1) a generalization bound for MPNNs, and, 2) the stability of MPNNs to subsampling of graph-signals. Our results apply to any regular enough MPNN on any distribution of graph-signals, making the analysis rather universal.
Key facts. Cited by 30 papers in the map (data through 14 Oct 2026). Builds on 23 of its 37 references that are in the map. First posted on arXiv 25 May 2023.
Builds on
23 of 37 references.
References · 23
- 2016Semi-Supervised Classification with Graph Convolutional Networkscited by 11,361
- 2017Inductive Representation Learning on Large Graphscited by 6,320
- 2018How Powerful are Graph Neural Networks?cited by 4,393
- 2017Neural Message Passing for Quantum Chemistrycited by 3,487
- 2019Fast Graph Representation Learning with PyTorch Geometriccited by 2,434
- 2016Convolutional Neural Networks on Graphs with Fast Localized Spectral Filteringcited by 2,089
- 2018Weisfeiler and Leman Go Neural: Higher-order Graph Neural Networkscited by 881
- 2018FastGCN: Fast Learning with Graph Convolutional Networks via Importance Samplingcited by 584
- 2019Cluster-GCN: An Efficient Algorithm for Training Deep and Large Graph Convolutional Networkscited by 541
- 2020Generalization and Representational Limits of Graph Neural Networkscited by 218
- 2017CayleyNets: Graph Convolutional Neural Networks with Complex Rational Spectral Filterscited by 203
- 2019On the equivalence between graph isomorphism testing and function approximation with GNNscited by 172
11 more
- 2021Geometric Deep Learning on Molecular Representationscited by 113
- 2020Expressive Power of Invariant and Equivariant Graph Neural Networkscited by 100
- 2019Transferability of Spectral Graph Convolutional Neural Networkscited by 92
- 2020A PAC-Bayesian Approach to Generalization Bounds for Graph Neural Networkscited by 85
- 2020Convergence and Stability of Graph Convolutional Networks on Large Random Graphscited by 76
- 2022Generalization Analysis of Message Passing Neural Networks on Large Random Graphscited by 59
- 2021Transferability of Graph Neural Networks: an Extended Graphon Approachcited by 53
- 2020Graphon Signal Processingcited by 37
- 2023WL meet VCcited by 31
- 2021On the Universality of Graph Neural Networks on Large Random Graphscited by 26
- 2020Graph and graphon neural network stabilitycited by 15
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Citing papers per year: 2023: 1; 2024: 12; 2025: 10; 2026: 7.
30 papers.
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- 2024Generalization Bounds for Message Passing Networks on Mixture of Graphonscited by 17
- 2024A Manifold Perspective on the Statistical Generalization of Graph Neural Networkscited by 17
- 2023Approximately Equivariant Graph Networkscited by 16
- 2024Weisfeiler-Leman at the margin: When more expressivity matterscited by 13
- 2024Towards Bridging Generalization and Expressivity of Graph Neural Networkscited by 12
- 2025Graph neural networks extrapolate out-of-distribution for shortest pathscited by 11
- 2024Learning on Large Graphs using Intersecting Communitiescited by 8
- 2024FSW-GNN: A Bi-Lipschitz WL-Equivalent Graph Neural Networkcited by 8
- 2024Almost Surely Asymptotically Constant Graph Neural Networkscited by 7
- 2024Future Directions in the Theory of Graph Machine Learningcited by 6
- 2025Graph Representational Learning: When Does More Expressivity Hurt Generalization?cited by 5
- 2024Generalization of Graph Neural Networks is Robust to Model Mismatchcited by 4
18 more
- 2025Learning from one graph: transductive learning guarantees via the geometry of small random worldscited by 3
- 2026Bridging Input Feature Spaces Towards Graph Foundation Modelscited by 3
- 2024Equivariant Machine Learning on Graphs with Nonlinear Spectral Filterscited by 2
- 2025Efficient Learning on Large Graphs using a Densifying Regularity Lemmacited by 2
- 2025Understanding Generalization in Node and Link Predictioncited by 2
- 2025Learning graphons from data: Random walks, transfer operators, and spectral clusteringcited by 2
- 2025On the Rademacher Complexity of Graph Neural Networks: Unifying Expressivity and Geometrycited by 2
- 2024Graphons of Line Graphscited by 1
- 2024PieClam: A Universal Graph Autoencoder Based on Overlapping Inclusive and Exclusive Communitiescited by 1
- 2025A Note on Graphon-Signal Analysis of Graph Neural Networkscited by 1
- 2025From Small to Large: Generalization Bounds for Transformers on Variable-Size Inputscited by 1
- 2026Topology-Aware PAC-Bayesian Generalization Analysis for Graph Neural Networkscited by 1
- 2025A Spectral Framework for Graph Neural Operators: Convergence Guarantees and Tradeoffscited by 0
- 2026Neural Networks With Dense Weights Are Not Universal Approximatorscited by 0
- 2026Graph Learning Should Move Beyond Restrictive Views of Spectral and Message-Passing GNNscited by 0
- 2026A Topological Characterization of Graph Neural Networks via Stochastic Block Model Embeddings on the n-Spherecited by 0
- 2026Warm-starting PDE solvers with any-dimensional machine learningcited by 0
- 2026Dimension-Free Scaling Laws for Size Generalization: An Exponential Separationcited by 0
- 2026Dimension-Free Scaling Laws for Size Generalization: An Exponential Separation13 Oct 2026
- 2026Warm-starting PDE solvers with any-dimensional machine learning30 Sep 2026
- 2026A Topological Characterization of Graph Neural Networks via Stochastic Block Model Embeddings on the n-Sphere29 May 2026
- 2026Bridging Input Feature Spaces Towards Graph Foundation Models6 May 2026
- 2026Topology-Aware PAC-Bayesian Generalization Analysis for Graph Neural Networks12 Apr 2026
- 2026Graph Learning Should Move Beyond Restrictive Views of Spectral and Message-Passing GNNs10 Feb 2026
- 2026Neural Networks With Dense Weights Are Not Universal Approximators7 Feb 2026
- 2025From Small to Large: Generalization Bounds for Transformers on Variable-Size Inputs14 Dec 2025
- 2025A Spectral Framework for Graph Neural Operators: Convergence Guarantees and Tradeoffs23 Oct 2025
- 2025On the Rademacher Complexity of Graph Neural Networks: Unifying Expressivity and Geometry11 Oct 2025
- 2025Learning from one graph: transductive learning guarantees via the geometry of small random worlds8 Sep 2025
- 2025A Note on Graphon-Signal Analysis of Graph Neural Networks25 Aug 2025
18 more
- 2025Learning graphons from data: Random walks, transfer operators, and spectral clustering24 Jul 2025
- 2025Understanding Generalization in Node and Link Prediction1 Jul 2025
- 2025Graph Representational Learning: When Does More Expressivity Hurt Generalization?16 May 2025
- 2025Efficient Learning on Large Graphs using a Densifying Regularity Lemma25 Apr 2025
- 2025Graph neural networks extrapolate out-of-distribution for shortest paths24 Mar 2025
- 2024Towards Bridging Generalization and Expressivity of Graph Neural Networks14 Oct 2024
- 2024FSW-GNN: A Bi-Lipschitz WL-Equivalent Graph Neural Network10 Oct 2024
- 2024PieClam: A Universal Graph Autoencoder Based on Overlapping Inclusive and Exclusive Communities18 Sep 2024
- 2024Graphons of Line Graphs3 Sep 2024
- 2024Generalization of Graph Neural Networks is Robust to Model Mismatch25 Aug 2024
- 2024A Manifold Perspective on the Statistical Generalization of Graph Neural Networks7 Jun 2024
- 2024Equivariant Machine Learning on Graphs with Nonlinear Spectral Filters3 Jun 2024
- 2024Learning on Large Graphs using Intersecting Communities31 May 2024
- 2024Generalization Bounds for Message Passing Networks on Mixture of Graphons4 Apr 2024
- 2024Almost Surely Asymptotically Constant Graph Neural Networks6 Mar 2024
- 2024Weisfeiler-Leman at the margin: When more expressivity matters12 Feb 2024
- 2024Future Directions in the Theory of Graph Machine Learning3 Feb 2024
- 2023Approximately Equivariant Graph Networks21 Aug 2023
- 2024Generalization Bounds for Message Passing Networks on Mixture of Graphonscited by 17
- 2024A Manifold Perspective on the Statistical Generalization of Graph Neural Networkscited by 17
- 2023Approximately Equivariant Graph Networkscited by 16
- 2024Weisfeiler-Leman at the margin: When more expressivity matterscited by 13
- 2024Towards Bridging Generalization and Expressivity of Graph Neural Networkscited by 12
- 2025Graph neural networks extrapolate out-of-distribution for shortest pathscited by 11
- 2024Learning on Large Graphs using Intersecting Communitiescited by 8
- 2024FSW-GNN: A Bi-Lipschitz WL-Equivalent Graph Neural Networkcited by 8
- 2024Almost Surely Asymptotically Constant Graph Neural Networkscited by 7
- 2024Future Directions in the Theory of Graph Machine Learningcited by 6
- 2025Graph Representational Learning: When Does More Expressivity Hurt Generalization?cited by 5
- 2024Generalization of Graph Neural Networks is Robust to Model Mismatchcited by 4
12 most cited of 30 All 30 (JSON)
- 2026Dimension-Free Scaling Laws for Size Generalization: An Exponential Separation13 Oct 2026
- 2026Warm-starting PDE solvers with any-dimensional machine learning30 Sep 2026
- 2026A Topological Characterization of Graph Neural Networks via Stochastic Block Model Embeddings on the n-Sphere29 May 2026
- 2026Bridging Input Feature Spaces Towards Graph Foundation Models6 May 2026
- 2026Topology-Aware PAC-Bayesian Generalization Analysis for Graph Neural Networks12 Apr 2026
- 2026Graph Learning Should Move Beyond Restrictive Views of Spectral and Message-Passing GNNs10 Feb 2026
- 2026Neural Networks With Dense Weights Are Not Universal Approximators7 Feb 2026
- 2025From Small to Large: Generalization Bounds for Transformers on Variable-Size Inputs14 Dec 2025
- 2025A Spectral Framework for Graph Neural Operators: Convergence Guarantees and Tradeoffs23 Oct 2025
- 2025On the Rademacher Complexity of Graph Neural Networks: Unifying Expressivity and Geometry11 Oct 2025
- 2025Learning from one graph: transductive learning guarantees via the geometry of small random worlds8 Sep 2025
- 2025A Note on Graphon-Signal Analysis of Graph Neural Networks25 Aug 2025
12 newest of 30 All 30 (JSON)