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PathRTM: Real-time prediction of KI-67 and tumor-infiltrated lymphocytes

arXiv 2305.00223 ↗First posted 23 Apr 2023q-bio.QM cs.CV cs.LGcited by 1

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Abstract (arXiv)

In this paper, we introduce PathRTM, a novel deep neural network detector based on RTMDet, for automated KI-67 proliferation and tumor-infiltrated lymphocyte estimation. KI-67 proliferation and tumor-infiltrated lymphocyte estimation play a crucial role in cancer diagnosis and treatment. PathRTM is an extension of the PathoNet work, which uses single pixel keypoints for within each cell. We demonstrate that PathRTM, with higher-level supervision in the form of bounding box labels generated automatically from the keypoints using NuClick, can significantly improve KI-67 proliferation and tumorinfiltrated lymphocyte estimation. Experiments on our custom dataset show that PathRTM achieves state-of-the-art performance in KI-67 immunopositive, immunonegative, and lymphocyte detection, with an average precision (AP) of 41.3%. Our results suggest that PathRTM is a promising approach for accurate KI-67 proliferation and tumor-infiltrated lymphocyte estimation, offering annotation efficiency, accurate predictive capabilities, and improved runtime. The method also enables estimation of cell sizes of interest, which was previously unavailable, through the bounding box predictions.

Key facts. Cited by 1 paper in the map (data through 14 Oct 2026). Builds on 8 of its 28 references that are in the map. First posted on arXiv 23 Apr 2023.

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8 of 28 references.

References · 8

  1. 2015U-Net: Convolutional Networks for Biomedical Image Segmentationcited by 19,713
  2. 2014Microsoft COCO: Common Objects in Contextcited by 17,608
  3. 2016Grad-CAM: Visual Explanations from Deep Networks via Gradient-based Localizationcited by 6,733
  4. 2015You Only Look Once: Unified, Real-Time Object Detectioncited by 4,852
  5. 2022RTMDet: An Empirical Study of Designing Real-Time Object Detectorscited by 195
  6. 2019Deep learning with noisy labels: exploring techniques and remedies in medical image analysiscited by 173
  7. 2019Deep Learning for Whole Slide Image Analysis: An Overviewcited by 51
  8. 2020NuClick: A Deep Learning Framework for Interactive Segmentation of Microscopy Imagescited by 46

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