Methods and datasets for segmentation of minimally invasive surgical instruments in endoscopic images and videos: A review of the state of the art
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Abstract (arXiv)
In the field of computer- and robot-assisted minimally invasive surgery, enormous progress has been made in recent years based on the recognition of surgical instruments in endoscopic images and videos. In particular, the determination of the position and type of instruments is of great interest. Current work involves both spatial and temporal information, with the idea that predicting the movement of surgical tools over time may improve the quality of the final segmentations. The provision of publicly available datasets has recently encouraged the development of new methods, mainly based on deep learning. In this review, we identify and characterize datasets used for method development and evaluation and quantify their frequency of use in the literature. We further present an overview of the current state of research regarding the segmentation and tracking of minimally invasive surgical instruments in endoscopic images and videos. The paper focuses on methods that work purely visually, without markers of any kind attached to the instruments, considering both single-frame semantic and instance segmentation approaches, as well as those that incorporate temporal information. The publications analyzed were identified through the platforms Google Scholar, Web of Science, and PubMed. The search terms used were "instrument segmentation", "instrument tracking", "surgical tool segmentation", and "surgical tool tracking", resulting in a total of 741 articles published between 01/2015 and 07/2023, of which 123 were included using systematic selection criteria. A discussion of the reviewed literature is provided, highlighting existing shortcomings and emphasizing the available potential for future developments.
Key facts. Cited by 18 papers in the map (data through 7 Oct 2026). Builds on 50 of its 160 references that are in the map. First posted on arXiv 25 Apr 2023.
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References · 50
- 2017Unpaired Image-to-Image Translation using Cycle-Consistent Adversarial Networkscited by 707
- 2016EndoNet: A Deep Architecture for Recognition Tasks on Laparoscopic Videoscited by 366
- 20192017 Robotic Instrument Segmentation Challengecited by 166
- 2020Surgical Data Science -- from Concepts toward Clinical Translationcited by 105
- 2020CholecSeg8k: A Semantic Segmentation Dataset for Laparoscopic Cholecystectomy Based on Cholec80cited by 104
- 2022AutoLaparo: A New Dataset of Integrated Multi-tasks for Image-guided Surgical Automation in Laparoscopic Hysterectomycited by 85
- 2018Automatic Instrument Segmentation in Robot-Assisted Surgery Using Deep Learningcited by 81
- 2020ISINet: An Instance-Based Approach for Surgical Instrument Segmentationcited by 67
- 2019Incorporating Temporal Prior from Motion Flow for Instrument Segmentation in Minimally Invasive Surgery Videocited by 64
- 2020Kvasir-Instrument: Diagnostic and therapeutic tool segmentation dataset in gastrointestinal endoscopycited by 54
- 2022TraSeTR: Track-to-Segment Transformer with Contrastive Query for Instance-level Instrument Segmentation in Robotic Surgerycited by 40
- 2019Generating large labeled data sets for laparoscopic image processing tasks using unpaired image-to-image translationcited by 38
38 more
- 2018Comparative evaluation of instrument segmentation and tracking methods in minimally invasive surgerycited by 36
- 2020Learning Motion Flows for Semi-supervised Instrument Segmentation from Robotic Surgical Videocited by 35
- 2022From Forks to Forceps: A New Framework for Instance Segmentation of Surgical Instrumentscited by 32
- 2017ToolNet: Holistically-Nested Real-Time Segmentation of Robotic Surgical Toolscited by 30
- 2022Min-Max Similarity: A Contrastive Semi-Supervised Deep Learning Network for Surgical Tools Segmentationcited by 28
- 2020Synthetic and Real Inputs for Tool Segmentation in Robotic Surgerycited by 25
- 2017Concurrent Segmentation and Localization for Tracking of Surgical Instrumentscited by 24
- 2019U-NetPlus: A Modified Encoder-Decoder U-Net Architecture for Semantic and Instance Segmentation of Surgical Instrumentcited by 23
- 2020Real-Time Instrument Segmentation in Robotic Surgery using Auxiliary Supervised Deep Adversarial Learningcited by 23
- 2021Image Compositing for Segmentation of Surgical Tools without Manual Annotationscited by 23
- 2017Deep Residual Learning for Instrument Segmentation in Robotic Surgerycited by 22
- 2020Endo-Sim2Real: Consistency learning-based domain adaptation for instrument segmentationcited by 20
- 2021ST-MTL: Spatio-Temporal Multitask Learning Model to Predict Scanpath While Tracking Instruments in Robotic Surgerycited by 20
- 2022FUN-SIS: a Fully UNsupervised approach for Surgical Instrument Segmentationcited by 20
- 2019Learning Where to Look While Tracking Instruments in Robot-assisted Surgerycited by 17
- 2020AP-MTL: Attention Pruned Multi-task Learning Model for Real-time Instrument Detection and Segmentation in Robot-assisted Surgerycited by 17
- 2021Real-time Instance Segmentation of Surgical Instruments using Attention and Multi-scale Feature Fusioncited by 17
- 2022Rethinking Surgical Instrument Segmentation: A Background Image Can Be All You Needcited by 16
- 2019Self-Supervised Surgical Tool Segmentation using Kinematic Informationcited by 15
- 2019Attention-Guided Lightweight Network for Real-Time Segmentation of Robotic Surgical Instrumentscited by 15
- 2020Real-Time Segmentation of Non-Rigid Surgical Tools based on Deep Learning and Trackingcited by 15
- 2020Unsupervised Surgical Instrument Segmentation via Anchor Generation and Semantic Diffusioncited by 14
- 2020Noisy-LSTM: Improving Temporal Awareness for Video Semantic Segmentationcited by 14
- 2021One to Many: Adaptive Instrument Segmentation via Meta Learning and Dynamic Online Adaptation in Robotic Surgical Videocited by 14
- 2020BARNet: Bilinear Attention Network with Adaptive Receptive Fields for Surgical Instrument Segmentationcited by 13
- 2021The surprising impact of mask-head architecture on novel class segmentationcited by 13
- 2019RASNet: Segmentation for Tracking Surgical Instruments in Surgical Videos Using Refined Attention Segmentation Networkcited by 11
- 2020LC-GAN: Image-to-image Translation Based on Generative Adversarial Network for Endoscopic Imagescited by 11
- 2021Robotic Endoscope Control via Autonomous Instrument Trackingcited by 10
- 2021Efficient Global-Local Memory for Real-time Instrument Segmentation of Robotic Surgical Videocited by 10
- 2020Towards Better Surgical Instrument Segmentation in Endoscopic Vision: Multi-Angle Feature Aggregation and Contour Supervisioncited by 9
- 2021Simulation-to-Real domain adaptation with teacher-student learning for endoscopic instrument segmentationcited by 9
- 2020Multi-frame Feature Aggregation for Real-time Instrument Segmentation in Endoscopic Videocited by 8
- 2021Co-Generation and Segmentation for Generalized Surgical Instrument Segmentation on Unlabelled Datacited by 8
- 2020Towards Unsupervised Learning for Instrument Segmentation in Robotic Surgery with Cycle-Consistent Adversarial Networkscited by 7
- 2021Assessing YOLACT++ for real time and robust instance segmentation of medical instruments in endoscopic procedurescited by 6
- 2020Searching for Efficient Architecture for Instrument Segmentation in Robotic Surgerycited by 5
- 2021Exploring Deep Learning Methods for Real-Time Surgical Instrument Segmentation in Laparoscopycited by 3
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Citing papers per year: 2024: 7; 2025: 5; 2026: 6.
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- 2025LEMON: A Large Endoscopic MONocular Dataset and Foundation Model for Perception in Surgical Settingscited by 19
- 2024LighTDiff: Surgical Endoscopic Image Low-Light Enhancement with T-Diffusioncited by 12
- 2024PitVis-2023 Challenge: Workflow Recognition in videos of Endoscopic Pituitary Surgerycited by 10
- 2025Surgical Scene Understanding in the Era of Foundation AI Models: A Comprehensive Reviewcited by 8
- 2025Video Dataset for Surgical Phase, Keypoint, and Instrument Recognition in Laparoscopic Surgery (PhaKIR)cited by 8
- 2024SegCol Challenge: Semantic Segmentation for Tools and Fold Edges in Colonoscopy datacited by 6
- 2025Comparative validation of surgical phase recognition, instrument keypoint estimation, and instrument instance segmentation in endoscopy: Results of the PhaKIR 2024 challengecited by 6
- 2024Tracking Everything in Robotic-Assisted Surgerycited by 5
- 2024SurgiTrack: Fine-Grained Multi-Class Multi-Tool Tracking in Surgical Videoscited by 3
- 2024Strategies to Improve Real-World Applicability of Laparoscopic Anatomy Segmentation Modelscited by 2
- 2024Automated Surgical Skill Assessment in Endoscopic Pituitary Surgery using Real-time Instrument Tracking on a High-fidelity Bench-top Phantomcited by 0
- 2025orGAN: A Synthetic Data Augmentation Pipeline for Simultaneous Generation of Surgical Images and Ground Truth Labelscited by 0
6 more
- 2026CataractSAM-2: A Domain-Adapted Model for Anterior Segment Surgery Segmentation and Scalable Ground-Truth Annotationcited by 0
- 2026Dense Structural Priors for Sparse Functional Landmark Localization in Surgical Videoscited by 0
- 2026First Investigation of Deep Learning for Intraoperative Gauze Segmentation in Minimally Invasive Abdominal Surgerycited by 0
- 2026Leveraging Transfer Learning with Class-Specific Decoders for Laparoscopic Segmentationcited by 0
- 2026SetPlanner: A Lightweight Plug-in Point-Set Planner for Frozen SAMcited by 0
- 2026Video-based Surgical Skill Assessment Using Dynamics-and-Uncertainty-Aware Tree-based Gaussian Process Classifiercited by 0
- 2026Video-based Surgical Skill Assessment Using Dynamics-and-Uncertainty-Aware Tree-based Gaussian Process Classifier21 Sep 2026
- 2026SetPlanner: A Lightweight Plug-in Point-Set Planner for Frozen SAM16 Sep 2026
- 2026Leveraging Transfer Learning with Class-Specific Decoders for Laparoscopic Segmentation31 Jul 2026
- 2026First Investigation of Deep Learning for Intraoperative Gauze Segmentation in Minimally Invasive Abdominal Surgery31 Jul 2026
- 2026Dense Structural Priors for Sparse Functional Landmark Localization in Surgical Videos30 Jun 2026
- 2026CataractSAM-2: A Domain-Adapted Model for Anterior Segment Surgery Segmentation and Scalable Ground-Truth Annotation23 Mar 2026
- 2025Video Dataset for Surgical Phase, Keypoint, and Instrument Recognition in Laparoscopic Surgery (PhaKIR)9 Nov 2025
- 2025Comparative validation of surgical phase recognition, instrument keypoint estimation, and instrument instance segmentation in endoscopy: Results of the PhaKIR 2024 challenge22 Jul 2025
- 2025orGAN: A Synthetic Data Augmentation Pipeline for Simultaneous Generation of Surgical Images and Ground Truth Labels17 Jun 2025
- 2025LEMON: A Large Endoscopic MONocular Dataset and Foundation Model for Perception in Surgical Settings25 Mar 2025
- 2025Surgical Scene Understanding in the Era of Foundation AI Models: A Comprehensive Review16 Feb 2025
- 2024SegCol Challenge: Semantic Segmentation for Tools and Fold Edges in Colonoscopy data20 Dec 2024
6 more
- 2024Tracking Everything in Robotic-Assisted Surgery29 Sep 2024
- 2024Automated Surgical Skill Assessment in Endoscopic Pituitary Surgery using Real-time Instrument Tracking on a High-fidelity Bench-top Phantom25 Sep 2024
- 2024PitVis-2023 Challenge: Workflow Recognition in videos of Endoscopic Pituitary Surgery2 Sep 2024
- 2024SurgiTrack: Fine-Grained Multi-Class Multi-Tool Tracking in Surgical Videos30 May 2024
- 2024LighTDiff: Surgical Endoscopic Image Low-Light Enhancement with T-Diffusion17 May 2024
- 2024Strategies to Improve Real-World Applicability of Laparoscopic Anatomy Segmentation Models25 Mar 2024
- 2025LEMON: A Large Endoscopic MONocular Dataset and Foundation Model for Perception in Surgical Settingscited by 19
- 2024PitVis-2023 Challenge: Workflow Recognition in videos of Endoscopic Pituitary Surgerycited by 10
- 2025Surgical Scene Understanding in the Era of Foundation AI Models: A Comprehensive Reviewcited by 8
- 2025Video Dataset for Surgical Phase, Keypoint, and Instrument Recognition in Laparoscopic Surgery (PhaKIR)cited by 8
- 2024SegCol Challenge: Semantic Segmentation for Tools and Fold Edges in Colonoscopy datacited by 6
- 2025Comparative validation of surgical phase recognition, instrument keypoint estimation, and instrument instance segmentation in endoscopy: Results of the PhaKIR 2024 challengecited by 6
- 2024Tracking Everything in Robotic-Assisted Surgerycited by 5
- 2024SurgiTrack: Fine-Grained Multi-Class Multi-Tool Tracking in Surgical Videoscited by 3
- 2024Strategies to Improve Real-World Applicability of Laparoscopic Anatomy Segmentation Modelscited by 2
- 2024Automated Surgical Skill Assessment in Endoscopic Pituitary Surgery using Real-time Instrument Tracking on a High-fidelity Bench-top Phantomcited by 0
- 2025orGAN: A Synthetic Data Augmentation Pipeline for Simultaneous Generation of Surgical Images and Ground Truth Labelscited by 0
- 2026CataractSAM-2: A Domain-Adapted Model for Anterior Segment Surgery Segmentation and Scalable Ground-Truth Annotationcited by 0
12 most cited of 17 All 17 (JSON)
- 2026Video-based Surgical Skill Assessment Using Dynamics-and-Uncertainty-Aware Tree-based Gaussian Process Classifier21 Sep 2026
- 2026SetPlanner: A Lightweight Plug-in Point-Set Planner for Frozen SAM16 Sep 2026
- 2026Leveraging Transfer Learning with Class-Specific Decoders for Laparoscopic Segmentation31 Jul 2026
- 2026First Investigation of Deep Learning for Intraoperative Gauze Segmentation in Minimally Invasive Abdominal Surgery31 Jul 2026
- 2026Dense Structural Priors for Sparse Functional Landmark Localization in Surgical Videos30 Jun 2026
- 2026CataractSAM-2: A Domain-Adapted Model for Anterior Segment Surgery Segmentation and Scalable Ground-Truth Annotation23 Mar 2026
- 2025Video Dataset for Surgical Phase, Keypoint, and Instrument Recognition in Laparoscopic Surgery (PhaKIR)9 Nov 2025
- 2025Comparative validation of surgical phase recognition, instrument keypoint estimation, and instrument instance segmentation in endoscopy: Results of the PhaKIR 2024 challenge22 Jul 2025
- 2025orGAN: A Synthetic Data Augmentation Pipeline for Simultaneous Generation of Surgical Images and Ground Truth Labels17 Jun 2025
- 2025LEMON: A Large Endoscopic MONocular Dataset and Foundation Model for Perception in Surgical Settings25 Mar 2025
- 2025Surgical Scene Understanding in the Era of Foundation AI Models: A Comprehensive Review16 Feb 2025
- 2024SegCol Challenge: Semantic Segmentation for Tools and Fold Edges in Colonoscopy data20 Dec 2024
12 newest of 17 All 17 (JSON)