Efficient automatic segmentation for multi-level pulmonary arteries: The PARSE challenge
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Abstract (arXiv)
Efficient automatic segmentation of multi-level (i.e. main and branch) pulmonary arteries (PA) in CTPA images plays a significant role in clinical applications. However, most existing methods concentrate only on main PA or branch PA segmentation separately and ignore segmentation efficiency. Besides, there is no public large-scale dataset focused on PA segmentation, which makes it highly challenging to compare the different methods. To benchmark multi-level PA segmentation algorithms, we organized the first Pulmonary ARtery SEgmentation (PARSE) challenge. On the one hand, we focus on both the main PA and the branch PA segmentation. On the other hand, for better clinical application, we assign the same score weight to segmentation efficiency (mainly running time and GPU memory consumption during inference) while ensuring PA segmentation accuracy. We present a summary of the top algorithms and offer some suggestions for efficient and accurate multi-level PA automatic segmentation. We provide the PARSE challenge as open-access for the community to benchmark future algorithm developments at urlhttps://parse2022.grand-challenge.org/Parse2022/.
Key facts. Cited by 26 papers in the map (data through 7 Oct 2026). Builds on 9 of its 25 references that are in the map. First posted on arXiv 7 Apr 2023.
Builds on
9 of 25 references.
References · 9
- 2015Deep Residual Learning for Image Recognitioncited by 51,809
- 2015U-Net: Convolutional Networks for Biomedical Image Segmentationcited by 19,604
- 20163D U-Net: Learning Dense Volumetric Segmentation from Sparse Annotationcited by 1,471
- 2017Road Extraction by Deep Residual U-Netcited by 333
- 2020clDice -- A Novel Topology-Preserving Loss Function for Tubular Structure Segmentationcited by 286
- 2019The state of the art in kidney and kidney tumor segmentation in contrast-enhanced CT imaging: Results of the KiTS19 Challengecited by 188
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Citing papers per year: 2023: 4; 2024: 6; 2025: 10; 2026: 6.
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- 2023Large-Vocabulary Segmentation for Medical Images with Text Promptscited by 60
- 2023SA-Med2D-20M Dataset: Segment Anything in 2D Medical Imaging with 20 Million maskscited by 54
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- 2026VesselTok: Tokenizing Vessel-like 3D Biomedical Graph Representations for Reconstruction and Generation19 Mar 2026
- 2026Free Lunch in Medical Image Foundation Model Pre-training via Randomized Synthesis and Disentanglement12 Feb 2026
- 2026Learning Topology-Aware Implicit Field for Unified Pulmonary Tree Modeling with Incomplete Topological Supervision2 Feb 2026
- 2025RefTr: Recurrent Refinement of Confluent Trajectories for 3D Vascular Tree Centerlines25 Nov 2025
- 2025MedSAM3: Delving into Segment Anything with Medical Concepts24 Nov 2025
- 2025Learning from Disagreement: A Group Decision Simulation Framework for Robust Medical Image Segmentation12 Oct 2025
- 2025MIMO: A medical vision language model with visual referring multimodal input and pixel grounding multimodal output11 Oct 2025
- 2025Trexplorer Super: Topologically Correct Centerline Tree Tracking of Tubular Objects in CT Volumes15 Jul 2025
- 2025MedSG-Bench: A Benchmark for Medical Image Sequences Grounding17 May 2025
14 more
- 2025nnInteractive: Redefining 3D Promptable Segmentation11 Mar 2025
- 2025TopoMortar: A dataset to evaluate image segmentation methods focused on topology accuracy5 Mar 2025
- 2025COMMA: Coordinate-aware Modulated Mamba Network for 3D Dispersed Vessel Segmentation4 Mar 2025
- 2025Self-adaptive vision-language model for 3D segmentation of pulmonary artery and vein7 Jan 2025
- 2024SegBook: A Simple Baseline and Cookbook for Volumetric Medical Image Segmentation21 Nov 2024
- 2024Large-Scale 3D Medical Image Pre-training with Geometric Context Priors13 Oct 2024
- 2024Deep Learning Techniques for Automatic Lateral X-ray Cephalometric Landmark Detection: Is the Problem Solved?24 Sep 2024
- 2024GMAI-MMBench: A Comprehensive Multimodal Evaluation Benchmark Towards General Medical AI6 Aug 2024
- 2024Centerline Boundary Dice Loss for Vascular Segmentation1 Jul 2024
- 2024Fuzzy Attention-based Border Rendering Network for Lung Organ Segmentation23 Jun 2024
- 2023Large-Vocabulary Segmentation for Medical Images with Text Prompts28 Dec 2023
- 2023MEDPSeg: Hierarchical polymorphic multitask learning for the segmentation of ground-glass opacities, consolidation, and pulmonary structures on computed tomography4 Dec 2023
- 2023SA-Med2D-20M Dataset: Segment Anything in 2D Medical Imaging with 20 Million masks20 Nov 2023
- 2023Topology-Aware Uncertainty for Image Segmentation9 Jun 2023
- 2024GMAI-MMBench: A Comprehensive Multimodal Evaluation Benchmark Towards General Medical AIcited by 96
- 2025MIMO: A medical vision language model with visual referring multimodal input and pixel grounding multimodal outputcited by 14
- 2025Self-adaptive vision-language model for 3D segmentation of pulmonary artery and veincited by 0
- 2025MIMO: A medical vision language model with visual referring multimodal input and pixel grounding multimodal output11 Oct 2025
- 2025Self-adaptive vision-language model for 3D segmentation of pulmonary artery and vein7 Jan 2025
- 2024GMAI-MMBench: A Comprehensive Multimodal Evaluation Benchmark Towards General Medical AI6 Aug 2024
- 2023Large-Vocabulary Segmentation for Medical Images with Text Promptscited by 60
- 2023SA-Med2D-20M Dataset: Segment Anything in 2D Medical Imaging with 20 Million maskscited by 54
- 2025nnInteractive: Redefining 3D Promptable Segmentationcited by 39
- 2024Large-Scale 3D Medical Image Pre-training with Geometric Context Priorscited by 34
- 2023Topology-Aware Uncertainty for Image Segmentationcited by 32
- 2024Centerline Boundary Dice Loss for Vascular Segmentationcited by 27
- 2025MedSAM3: Delving into Segment Anything with Medical Conceptscited by 25
- 2025Trexplorer Super: Topologically Correct Centerline Tree Tracking of Tubular Objects in CT Volumescited by 4
- 2023MEDPSeg: Hierarchical polymorphic multitask learning for the segmentation of ground-glass opacities, consolidation, and pulmonary structures on computed tomographycited by 2
- 2024Deep Learning Techniques for Automatic Lateral X-ray Cephalometric Landmark Detection: Is the Problem Solved?cited by 1
- 2025TopoMortar: A dataset to evaluate image segmentation methods focused on topology accuracycited by 1
- 2025RefTr: Recurrent Refinement of Confluent Trajectories for 3D Vascular Tree Centerlinescited by 1
12 most cited of 21 All 21 (JSON)
- 2026Pulmonary Embolism Risk Stratification from CTPA and Medical Records: Vascular Graphs Are Not All You Need24 Jun 2026
- 2026SBP-Net: Learning Thin Structure Reconstruction with Sliding-Box Projections2 Jun 2026
- 2026Sparse Representation Learning for Vessels2 May 2026
- 2026VesselTok: Tokenizing Vessel-like 3D Biomedical Graph Representations for Reconstruction and Generation19 Mar 2026
- 2026Free Lunch in Medical Image Foundation Model Pre-training via Randomized Synthesis and Disentanglement12 Feb 2026
- 2026Learning Topology-Aware Implicit Field for Unified Pulmonary Tree Modeling with Incomplete Topological Supervision2 Feb 2026
- 2025RefTr: Recurrent Refinement of Confluent Trajectories for 3D Vascular Tree Centerlines25 Nov 2025
- 2025MedSAM3: Delving into Segment Anything with Medical Concepts24 Nov 2025
- 2025Learning from Disagreement: A Group Decision Simulation Framework for Robust Medical Image Segmentation12 Oct 2025
- 2025Trexplorer Super: Topologically Correct Centerline Tree Tracking of Tubular Objects in CT Volumes15 Jul 2025
- 2025nnInteractive: Redefining 3D Promptable Segmentation11 Mar 2025
- 2025TopoMortar: A dataset to evaluate image segmentation methods focused on topology accuracy5 Mar 2025
12 newest of 21 All 21 (JSON)