ViT-DAE: Transformer-driven Diffusion Autoencoder for Histopathology Image Analysis
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Abstract (arXiv)
Generative AI has received substantial attention in recent years due to its ability to synthesize data that closely resembles the original data source. While Generative Adversarial Networks (GANs) have provided innovative approaches for histopathological image analysis, they suffer from limitations such as mode collapse and overfitting in discriminator. Recently, Denoising Diffusion models have demonstrated promising results in computer vision. These models exhibit superior stability during training, better distribution coverage, and produce high-quality diverse images. Additionally, they display a high degree of resilience to noise and perturbations, making them well-suited for use in digital pathology, where images commonly contain artifacts and exhibit significant variations in staining. In this paper, we present a novel approach, namely ViT-DAE, which integrates vision transformers (ViT) and diffusion autoencoders for high-quality histopathology image synthesis. This marks the first time that ViT has been introduced to diffusion autoencoders in computational pathology, allowing the model to better capture the complex and intricate details of histopathology images. We demonstrate the effectiveness of ViT-DAE on three publicly available datasets. Our approach outperforms recent GAN-based and vanilla DAE methods in generating realistic images.
Key facts. Cited by 15 papers in the map (data through 13 Oct 2026). Builds on 22 of its 29 references that are in the map. First posted on arXiv 3 Apr 2023.
Builds on
22 of 29 references.
References · 22
- 2017Attention Is All You Needcited by 60,106
- 2020An Image is Worth 16x16 Words: Transformers for Image Recognition at Scalecited by 30,043
- 2020Denoising Diffusion Probabilistic Modelscited by 20,952
- 2015U-Net: Convolutional Networks for Biomedical Image Segmentationcited by 19,656
- 2021High-Resolution Image Synthesis with Latent Diffusion Modelscited by 18,777
- 2020Denoising Diffusion Implicit Modelscited by 9,718
- 2020Score-Based Generative Modeling through Stochastic Differential Equationscited by 9,028
- 2021Diffusion Models Beat GANs on Image Synthesiscited by 8,213
- 2021Emerging Properties in Self-Supervised Vision Transformerscited by 6,915
- 2020Taming Transformers for High-Resolution Image Synthesiscited by 3,237
- 2019Improved Precision and Recall Metric for Assessing Generative Modelscited by 928
- 2021Tackling the Generative Learning Trilemma with Denoising Diffusion GANscited by 516
10 more
- 2021Diffusion Autoencoders: Toward a Meaningful and Decodable Representationcited by 448
- 2021Intriguing Properties of Vision Transformerscited by 446
- 2018Rotation Equivariant CNNs for Digital Pathologycited by 420
- 2022The Role of ImageNet Classes in Fr'echet Inception Distancecited by 213
- 2022A Morphology Focused Diffusion Probabilistic Model for Synthesis of Histopathology Imagescited by 74
- 2021Hard Sample Aware Noise Robust Learning for Histopathology Image Classificationcited by 48
- 2021Selective Synthetic Augmentation with HistoGAN for Improved Histopathology Image Classificationcited by 35
- 2021Self-Supervised Representation Learning using Visual Field Expansion on Digital Pathologycited by 25
- 2019Generative Image Translation for Data Augmentation in Colorectal Histopathology Imagescited by 15
- 2022Artifact Removal in Histopathology Imagescited by 1
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Citing papers per year: 2023: 2; 2024: 5; 2025: 5; 2026: 3.
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- 2023PathLDM: Text conditioned Latent Diffusion Model for Histopathologycited by 51
- 2023Learned representation-guided diffusion models for large-image generationcited by 39
- 2024ZoomLDM: Latent Diffusion Model for multi-scale image generationcited by 15
- 2025Content Generation Models in Computational Pathology: A Comprehensive Survey on Methods, Applications, and Challengescited by 5
- 2025Multimodal LLM-Guided Semantic Correction in Text-to-Image Diffusioncited by 5
- 2024A Survey on Large Language Models from Concept to Implementationcited by 4
- 2024Histo-Diffusion: A Diffusion Super-Resolution Method for Digital Pathology with Comprehensive Quality Assessmentcited by 4
- 2025PosDiffAE: Position-aware Diffusion Auto-encoder For High-Resolution Brain Tissue Classification Incorporating Artifact Restorationcited by 3
- 2024DiNO-Diffusion. Scaling Medical Diffusion via Self-Supervised Pre-Trainingcited by 2
- 2024Mask-guided cross-image attention for zero-shot in-silico histopathologic image generation with a diffusion modelcited by 2
- 2025Beyond H&E: Unlocking Pathological Insights with Polarization Imagingcited by 0
- 2025Scaling Federated Learning Solutions with Kubernetes for Synthesizing Histopathology Imagescited by 0
3 more
- 2026Structure-Guided Histopathology Synthesis via Dual-LoRA Diffusioncited by 0
- 2026Layout-Guided Controllable Pathology Image Generation with In-Context Diffusion Transformerscited by 0
- 2026Central-to-Local Adaptive Generative Diffusion Framework for Improving Gene Expression Prediction in Data-Limited Spatial Transcriptomicscited by 0
- 2026Central-to-Local Adaptive Generative Diffusion Framework for Improving Gene Expression Prediction in Data-Limited Spatial Transcriptomics27 Mar 2026
- 2026Layout-Guided Controllable Pathology Image Generation with In-Context Diffusion Transformers11 Mar 2026
- 2026Structure-Guided Histopathology Synthesis via Dual-LoRA Diffusion4 Mar 2026
- 2025PosDiffAE: Position-aware Diffusion Auto-encoder For High-Resolution Brain Tissue Classification Incorporating Artifact Restoration3 Jul 2025
- 2025Multimodal LLM-Guided Semantic Correction in Text-to-Image Diffusion26 May 2025
- 2025Content Generation Models in Computational Pathology: A Comprehensive Survey on Methods, Applications, and Challenges16 May 2025
- 2025Scaling Federated Learning Solutions with Kubernetes for Synthesizing Histopathology Images5 Apr 2025
- 2025Beyond H&E: Unlocking Pathological Insights with Polarization Imaging5 Mar 2025
- 2024ZoomLDM: Latent Diffusion Model for multi-scale image generation25 Nov 2024
- 2024Histo-Diffusion: A Diffusion Super-Resolution Method for Digital Pathology with Comprehensive Quality Assessment27 Aug 2024
- 2024Mask-guided cross-image attention for zero-shot in-silico histopathologic image generation with a diffusion model16 Jul 2024
- 2024DiNO-Diffusion. Scaling Medical Diffusion via Self-Supervised Pre-Training16 Jul 2024
- 2023PathLDM: Text conditioned Latent Diffusion Model for Histopathologycited by 51
- 2023Learned representation-guided diffusion models for large-image generationcited by 39
- 2024ZoomLDM: Latent Diffusion Model for multi-scale image generationcited by 15
- 2025PosDiffAE: Position-aware Diffusion Auto-encoder For High-Resolution Brain Tissue Classification Incorporating Artifact Restorationcited by 3
- 2024DiNO-Diffusion. Scaling Medical Diffusion via Self-Supervised Pre-Trainingcited by 2
- 2024Mask-guided cross-image attention for zero-shot in-silico histopathologic image generation with a diffusion modelcited by 2
- 2026Structure-Guided Histopathology Synthesis via Dual-LoRA Diffusioncited by 0
- 2026Layout-Guided Controllable Pathology Image Generation with In-Context Diffusion Transformerscited by 0
- 2026Layout-Guided Controllable Pathology Image Generation with In-Context Diffusion Transformers11 Mar 2026
- 2026Structure-Guided Histopathology Synthesis via Dual-LoRA Diffusion4 Mar 2026
- 2025PosDiffAE: Position-aware Diffusion Auto-encoder For High-Resolution Brain Tissue Classification Incorporating Artifact Restoration3 Jul 2025
- 2024ZoomLDM: Latent Diffusion Model for multi-scale image generation25 Nov 2024
- 2024Mask-guided cross-image attention for zero-shot in-silico histopathologic image generation with a diffusion model16 Jul 2024
- 2024DiNO-Diffusion. Scaling Medical Diffusion via Self-Supervised Pre-Training16 Jul 2024
- 2023Learned representation-guided diffusion models for large-image generation12 Dec 2023
- 2023PathLDM: Text conditioned Latent Diffusion Model for Histopathology1 Sep 2023
- 2025Content Generation Models in Computational Pathology: A Comprehensive Survey on Methods, Applications, and Challengescited by 5
- 2024A Survey on Large Language Models from Concept to Implementationcited by 4
- 2024Histo-Diffusion: A Diffusion Super-Resolution Method for Digital Pathology with Comprehensive Quality Assessmentcited by 4
- 2025Beyond H&E: Unlocking Pathological Insights with Polarization Imagingcited by 0
- 2025Scaling Federated Learning Solutions with Kubernetes for Synthesizing Histopathology Imagescited by 0
- 2026Central-to-Local Adaptive Generative Diffusion Framework for Improving Gene Expression Prediction in Data-Limited Spatial Transcriptomicscited by 0
- 2026Central-to-Local Adaptive Generative Diffusion Framework for Improving Gene Expression Prediction in Data-Limited Spatial Transcriptomics27 Mar 2026
- 2025Content Generation Models in Computational Pathology: A Comprehensive Survey on Methods, Applications, and Challenges16 May 2025
- 2025Scaling Federated Learning Solutions with Kubernetes for Synthesizing Histopathology Images5 Apr 2025
- 2025Beyond H&E: Unlocking Pathological Insights with Polarization Imaging5 Mar 2025
- 2024Histo-Diffusion: A Diffusion Super-Resolution Method for Digital Pathology with Comprehensive Quality Assessment27 Aug 2024
- 2024A Survey on Large Language Models from Concept to Implementation27 Mar 2024
Similar, not cited
Close in wording, no citation either way
- 2024Unleashing the Potential of Synthetic Images: A Study on Histopathology Image Classification
- 2026HistDiT: A Structure-Aware Latent Conditional Diffusion Model for High-Fidelity Virtual Staining in Histopathology
- 2024Improving text-conditioned latent diffusion for cancer pathology
- 2024Comparative Analysis of Diffusion Generative Models in Computational Pathology
- 2024LatentArtiFusion: An Effective and Efficient Histological Artifacts Restoration Framework
- 2023Latent Diffusion Models with Image-Derived Annotations for Enhanced AI-Assisted Cancer Diagnosis in Histopathology
- 2025PixCell: A generative foundation model for digital histopathology images
- 2025GANs vs. Diffusion Models for virtual staining with the HER2match dataset