DADApy: Distance-based Analysis of DAta-manifolds in Python
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Abstract (arXiv)
DADApy is a python software package for analysing and characterising high-dimensional data manifolds. It provides methods for estimating the intrinsic dimension and the probability density, for performing density-based clustering and for comparing different distance metrics. We review the main functionalities of the package and exemplify its usage in toy cases and in a real-world application. DADApy is freely available under the open-source Apache 2.0 license.
Key facts. Cited by 22 papers in the map (data through 7 Oct 2026). Builds on 8 of its 50 references that are in the map. First posted on arXiv 4 May 2022.
Builds on
8 of 50 references.
References · 8
- 2019Intrinsic dimension of data representations in deep neural networkscited by 276
- 2018Estimating the intrinsic dimension of datasets by a minimal neighborhood informationcited by 246
- 2020Hierarchical nucleation in deep neural networkscited by 31
- 2021Ranking the information content of distance measurescited by 22
- 2018Automatic topography of high-dimensional data sets by non-parametric Density Peak clusteringcited by 15
- 2017Unfolding Hidden Barriers by Active Enhanced Samplingcited by 6
- 2021Distributional Results for Model-Based Intrinsic Dimension Estimatorscited by 5
- 2020Dynamical Landscape and Multistability of a Climate Modelcited by 1
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Citing papers per year: 2022: 1; 2023: 1; 2024: 8; 2025: 7; 2026: 5.
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- 2023The geometry of hidden representations of large transformer modelscited by 108
- 2025EQ-VAE: Equivariance Regularized Latent Space for Improved Generative Image Modelingcited by 85
- 2025Latent Thinking Optimization: Your Latent Reasoning Language Model Secretly Encodes Reward Signals in Its Latent Thoughtscited by 18
- 2024CryoBench: Diverse and challenging datasets for the heterogeneity problem in cryo-EMcited by 15
- 2024The representation landscape of few-shot learning and fine-tuning in large language modelscited by 14
- 2025Unlocking Pretrained Vision Transformers for Time Series Classificationcited by 6
- 2026FSVideo: Fast Speed Video Diffusion Model in a Highly-Compressed Latent Spacecited by 5
- 2022Intrinsic dimension estimation for discrete metricscited by 4
- 2024Automatic feature selection and weighting in molecular systems using Differentiable Information Imbalancecited by 4
- 2024Scale adaptive and robust intrinsic dimension estimation via optimal neighbourhood identificationcited by 3
- 2025LF2AR: Accounting for Layerwise Dynamics to Improve Multimodal Adaptation of Language Modelscited by 3
- 2024Unsupervised detection of semantic correlations in big datacited by 2
10 more
- 2024Understanding Variational Autoencoders with Intrinsic Dimension and Information Imbalancecited by 1
- 2025Detecting Localized Density Anomalies in Multivariate Data via Coin-Flip Statisticscited by 1
- 2024Quantifying Manifolds: Do the manifolds learned by Generative Adversarial Networks converge to the real data manifoldcited by 0
- 2024Density Estimation via Binless Multidimensional Integrationcited by 0
- 2025When fractional quasi p-norms concentratecited by 0
- 2025Coupled reaction and diffusion governing interface evolution in solid-state batteriescited by 0
- 2026Rethinking Intrinsic Dimension Estimation in Neural Representationscited by 0
- 2026Texture Representations in Deep Vision Models: Comparing CNNs, Vision Transformers, and Human Perceptioncited by 0
- 2026Local and Global Regimes of Geometric Complexity in Language Model Representationscited by 0
- 2026Psychosis involves a deficit of information compression in connected speechcited by 0
- 2026Psychosis involves a deficit of information compression in connected speech14 Sep 2026
- 2026Local and Global Regimes of Geometric Complexity in Language Model Representations14 Aug 2026
- 2026Texture Representations in Deep Vision Models: Comparing CNNs, Vision Transformers, and Human Perception9 Jul 2026
- 2026Rethinking Intrinsic Dimension Estimation in Neural Representations22 Apr 2026
- 2026FSVideo: Fast Speed Video Diffusion Model in a Highly-Compressed Latent Space2 Feb 2026
- 2025Latent Thinking Optimization: Your Latent Reasoning Language Model Secretly Encodes Reward Signals in Its Latent Thoughts30 Sep 2025
- 2025Coupled reaction and diffusion governing interface evolution in solid-state batteries12 Jun 2025
- 2025Unlocking Pretrained Vision Transformers for Time Series Classification10 Jun 2025
- 2025When fractional quasi p-norms concentrate26 May 2025
- 2025Detecting Localized Density Anomalies in Multivariate Data via Coin-Flip Statistics31 Mar 2025
- 2025LF2AR: Accounting for Layerwise Dynamics to Improve Multimodal Adaptation of Language Models8 Mar 2025
- 2025EQ-VAE: Equivariance Regularized Latent Space for Improved Generative Image Modeling13 Feb 2025
10 more
- 2024Unsupervised detection of semantic correlations in big data4 Nov 2024
- 2024Understanding Variational Autoencoders with Intrinsic Dimension and Information Imbalance4 Nov 2024
- 2024Automatic feature selection and weighting in molecular systems using Differentiable Information Imbalance30 Oct 2024
- 2024The representation landscape of few-shot learning and fine-tuning in large language models5 Sep 2024
- 2024CryoBench: Diverse and challenging datasets for the heterogeneity problem in cryo-EM10 Aug 2024
- 2024Density Estimation via Binless Multidimensional Integration10 Jul 2024
- 2024Scale adaptive and robust intrinsic dimension estimation via optimal neighbourhood identification24 May 2024
- 2024Quantifying Manifolds: Do the manifolds learned by Generative Adversarial Networks converge to the real data manifold8 Mar 2024
- 2023The geometry of hidden representations of large transformer models1 Feb 2023
- 2022Intrinsic dimension estimation for discrete metrics20 Jul 2022
- 2023The geometry of hidden representations of large transformer modelscited by 108
- 2025EQ-VAE: Equivariance Regularized Latent Space for Improved Generative Image Modelingcited by 85
- 2024CryoBench: Diverse and challenging datasets for the heterogeneity problem in cryo-EMcited by 15
- 2024The representation landscape of few-shot learning and fine-tuning in large language modelscited by 14
- 2025Unlocking Pretrained Vision Transformers for Time Series Classificationcited by 6
- 2022Intrinsic dimension estimation for discrete metricscited by 4
- 2024Automatic feature selection and weighting in molecular systems using Differentiable Information Imbalancecited by 4
- 2024Scale adaptive and robust intrinsic dimension estimation via optimal neighbourhood identificationcited by 3
- 2025LF2AR: Accounting for Layerwise Dynamics to Improve Multimodal Adaptation of Language Modelscited by 3
- 2024Unsupervised detection of semantic correlations in big datacited by 2
- 2024Understanding Variational Autoencoders with Intrinsic Dimension and Information Imbalancecited by 1
- 2025Detecting Localized Density Anomalies in Multivariate Data via Coin-Flip Statisticscited by 1
12 most cited of 20 All 20 (JSON)
- 2026Psychosis involves a deficit of information compression in connected speech14 Sep 2026
- 2026Local and Global Regimes of Geometric Complexity in Language Model Representations14 Aug 2026
- 2026Texture Representations in Deep Vision Models: Comparing CNNs, Vision Transformers, and Human Perception9 Jul 2026
- 2026Rethinking Intrinsic Dimension Estimation in Neural Representations22 Apr 2026
- 2025Coupled reaction and diffusion governing interface evolution in solid-state batteries12 Jun 2025
- 2025Unlocking Pretrained Vision Transformers for Time Series Classification10 Jun 2025
- 2025When fractional quasi p-norms concentrate26 May 2025
- 2025Detecting Localized Density Anomalies in Multivariate Data via Coin-Flip Statistics31 Mar 2025
- 2025LF2AR: Accounting for Layerwise Dynamics to Improve Multimodal Adaptation of Language Models8 Mar 2025
- 2025EQ-VAE: Equivariance Regularized Latent Space for Improved Generative Image Modeling13 Feb 2025
- 2024Unsupervised detection of semantic correlations in big data4 Nov 2024
- 2024Understanding Variational Autoencoders with Intrinsic Dimension and Information Imbalance4 Nov 2024
12 newest of 20 All 20 (JSON)