Unfolding Hidden Barriers by Active Enhanced Sampling
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Abstract (arXiv)
Collective variable (CV) or order parameter based enhanced sampling algorithms have achieved great success due to their ability to efficiently explore the rough potential energy landscapes of complex systems. However, the degeneracy of microscopic configurations, originating from the orthogonal space perpendicular to the CVs, is likely to shadow "hidden barriers" and greatly reduce the efficiency of CV-based sampling. Here we demonstrate that systematic machine learning CV, through enhanced sampling, can iteratively lift such degeneracies on the fly. We introduce an active learning scheme that consists of a parametric CV learner based on deep neural network and a CV-based enhanced sampler. Our active enhanced sampling (AES) algorithm is capable of identifying the least informative regions based on a historical sample, forming a positive feedback loop between the CV learner and sampler. This approach is able to globally preserve kinetic characteristics by incrementally enhancing both sample completeness and CV quality.
Key facts. Cited by 6 papers in the map (data through 7 Oct 2026). First posted on arXiv 21 May 2017.
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Citing papers per year: 2022: 2; 2023: 2; 2024: 2.
6 papers.
- 2022DADApy: Distance-based Analysis of DAta-manifolds in Pythoncited by 22
- 2022Reweighted Manifold Learning of Collective Variables from Enhanced Sampling Simulationscited by 4
- 2024Spectral Map for Slow Collective Variables, Markovian Dynamics, and Transition State Ensemblescited by 3
- 2024Machine Learning of Slow Collective Variables and Enhanced Sampling via Spatial Techniquescited by 2
- 2023Enhanced Sampling with Machine Learning: A Reviewcited by 1
- 2023Unbiasing Enhanced Sampling on a High-dimensional Free Energy Surface with Deep Generative Modelcited by 1
- 2024Machine Learning of Slow Collective Variables and Enhanced Sampling via Spatial Techniques30 Dec 2024
- 2024Spectral Map for Slow Collective Variables, Markovian Dynamics, and Transition State Ensembles10 Sep 2024
- 2023Unbiasing Enhanced Sampling on a High-dimensional Free Energy Surface with Deep Generative Model14 Dec 2023
- 2023Enhanced Sampling with Machine Learning: A Review15 Jun 2023
- 2022Reweighted Manifold Learning of Collective Variables from Enhanced Sampling Simulations29 Jul 2022
- 2022DADApy: Distance-based Analysis of DAta-manifolds in Python4 May 2022