High-throughput Pairwise Alignment with the Wavefront Algorithm using Processing-in-Memory
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Abstract (arXiv)
We show that the wavefront algorithm can achieve higher pairwise read alignment throughput on a UPMEM PIM system than on a server-grade multi-threaded CPU system.
Key facts. Cited by 4 papers in the map (data through 14 Oct 2026). First posted on arXiv 5 Apr 2022.
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Citing papers per year: 2022: 2; 2023: 1; 2024: 1.
4 papers.
- 2022Machine Learning Training on a Real Processing-in-Memory Systemcited by 4
- 2022An Experimental Evaluation of Machine Learning Training on a Real Processing-in-Memory Systemcited by 2
- 2024SwiftRL: Towards Efficient Reinforcement Learning on Real Processing-In-Memory Systemscited by 2
- 2023TransPimLib: A Library for Efficient Transcendental Functions on Processing-in-Memory Systemscited by 1
- 2024SwiftRL: Towards Efficient Reinforcement Learning on Real Processing-In-Memory Systems7 May 2024
- 2023TransPimLib: A Library for Efficient Transcendental Functions on Processing-in-Memory Systems3 Apr 2023
- 2022An Experimental Evaluation of Machine Learning Training on a Real Processing-in-Memory System16 Jul 2022
- 2022Machine Learning Training on a Real Processing-in-Memory System13 Jun 2022