Attentive Walk-Aggregating Graph Neural Networks
Not on the map. Why?
Abstract (arXiv)
Graph neural networks (GNNs) have been shown to possess strong representation power, which can be exploited for downstream prediction tasks on graph-structured data, such as molecules and social networks. They typically learn representations by aggregating information from the K-hop neighborhood of individual vertices or from the enumerated walks in the graph. Prior studies have demonstrated the effectiveness of incorporating weighting schemes into GNNs; however, this has been primarily limited to K-hop neighborhood GNNs so far. In this paper, we aim to design an algorithm incorporating weighting schemes into walk-aggregating GNNs and analyze their effect. We propose a novel GNN model, called AWARE, that aggregates information about the walks in the graph using attention schemes. This leads to an end-to-end supervised learning method for graph-level prediction tasks in the standard setting where the input is the adjacency and vertex information of a graph, and the output is a predicted label for the graph. We then perform theoretical, empirical, and interpretability analyses of AWARE. Our theoretical analysis in a simplified setting identifies successful conditions for provable guarantees, demonstrating how the graph information is encoded in the representation, and how the weighting schemes in AWARE affect the representation and learning performance. Our experiments demonstrate the strong performance of AWARE in graph-level prediction tasks in the standard setting in the domains of molecular property prediction and social networks. Lastly, our interpretation study illustrates that AWARE can successfully capture the important substructures of the input graph. The code is available on hrefhttps://github.com/mehmetfdemirel/awareGitHub.
Key facts. Cited by 10 papers in the map (data through 7 Oct 2026). Builds on 39 of its 69 references that are in the map. First posted on arXiv 6 Oct 2021.
Builds on
39 of 69 references.
References · 39
- 2017Attention Is All You Needcited by 59,932
- 2018BERT: Pre-training of Deep Bidirectional Transformers for Language Understandingcited by 40,204
- 2020An Image is Worth 16x16 Words: Transformers for Image Recognition at Scalecited by 29,915
- 2019Exploring the Limits of Transfer Learning with a Unified Text-to-Text Transformercited by 14,491
- 2016Semi-Supervised Classification with Graph Convolutional Networkscited by 11,282
- 2017Graph Attention Networkscited by 8,854
- 2016XGBoost: A Scalable Tree Boosting Systemcited by 5,120
- 2014Neural Machine Translation by Jointly Learning to Align and Translatecited by 4,530
- 2018How Powerful are Graph Neural Networks?cited by 4,355
- 2017Neural Message Passing for Quantum Chemistrycited by 3,460
- 2014DeepWalk: Online Learning of Social Representationscited by 1,543
- 2015Show, Attend and Tell: Neural Image Caption Generation with Visual Attentioncited by 1,421
27 more
- 2018Graph Convolutional Neural Networks for Web-Scale Recommender Systemscited by 1,133
- 2017MoleculeNet: A Benchmark for Molecular Machine Learningcited by 1,037
- 2015Effective Approaches to Attention-based Neural Machine Translationcited by 1,024
- 2019Strategies for Pre-training Graph Neural Networkscited by 964
- 2018Weisfeiler and Leman Go Neural: Higher-order Graph Neural Networkscited by 878
- 2015Gated Graph Sequence Neural Networkscited by 792
- 2015Convolutional Networks on Graphs for Learning Molecular Fingerprintscited by 751
- 2019GNNExplainer: Generating Explanations for Graph Neural Networkscited by 735
- 2020Directional Message Passing for Molecular Graphscited by 556
- 2019Stand-Alone Self-Attention in Vision Modelscited by 542
- 2019Graph Transformer Networkscited by 520
- 2016Interaction Networks for Learning about Objects, Relations and Physicscited by 503
- 2020Principal Neighbourhood Aggregation for Graph Netscited by 477
- 2019Analyzing Learned Molecular Representations for Property Predictioncited by 373
- 2016From Softmax to Sparsemax: A Sparse Model of Attention and Multi-Label Classificationcited by 337
- 2020Exploring Self-attention for Image Recognitioncited by 313
- 2016Molecular Graph Convolutions: Moving Beyond Fingerprintscited by 238
- 2015Order Matters: Sequence to sequence for setscited by 236
- 2020Expressive Power of Invariant and Equivariant Graph Neural Networkscited by 100
- 2018N-Gram Graph: Simple Unsupervised Representation for Graphs, with Applications to Moleculescited by 93
- 2020Molecule Attention Transformercited by 92
- 2016Low Data Drug Discovery with One-shot Learningcited by 91
- 2020Multi-hop Attention Graph Neural Networkcited by 53
- 2019Understanding the Representation Power of Graph Neural Networks in Learning Graph Topologycited by 52
- 2018Latent Alignment and Variational Attentioncited by 36
- 2020Self-Supervised Graph Transformer on Large-Scale Molecular Datacited by 17
- 2019Restricted Isometry Property under High Correlationscited by 5
Built on by
Citing papers per year: 2023: 3; 2024: 2; 2025: 5.
10 papers.
- 2023A Group Symmetric Stochastic Differential Equation Model for Molecule Multi-modal Pretrainingcited by 32
- 2023ChatGPT-powered Conversational Drug Editing Using Retrieval and Domain Feedbackcited by 30
- 2024Training Tensor Attention Efficiently: From Cubic to Almost Linear Timecited by 29
- 2023Symmetry-Informed Geometric Representation for Molecules, Proteins, and Crystalline Materialscited by 22
- 2024Theoretical Constraints on the Expressive Power of mathsfRoPE-based Tensor Attention Transformerscited by 12
- 2025Theoretical Guarantees for High Order Trajectory Refinement in Generative Flowscited by 9
- 2025Fast RoPE Attention: Combining the Polynomial Method and Fast Fourier Transformcited by 9
- 2025Neural Algorithmic Reasoning for Hypergraphs with Looped Transformerscited by 3
- 2025Theoretical Foundation of Flow-Based Time Series Generation: Provable Approximation, Generalization, and Efficiencycited by 2
- 2025Memorization in Graph Neural Networkscited by 0
- 2025Memorization in Graph Neural Networks26 Aug 2025
- 2025Fast RoPE Attention: Combining the Polynomial Method and Fast Fourier Transform17 May 2025
- 2025Theoretical Foundation of Flow-Based Time Series Generation: Provable Approximation, Generalization, and Efficiency18 Mar 2025
- 2025Theoretical Guarantees for High Order Trajectory Refinement in Generative Flows12 Mar 2025
- 2025Neural Algorithmic Reasoning for Hypergraphs with Looped Transformers18 Jan 2025
- 2024Theoretical Constraints on the Expressive Power of mathsfRoPE-based Tensor Attention Transformers23 Dec 2024
- 2024Training Tensor Attention Efficiently: From Cubic to Almost Linear Time26 May 2024
- 2023Symmetry-Informed Geometric Representation for Molecules, Proteins, and Crystalline Materials15 Jun 2023
- 2023ChatGPT-powered Conversational Drug Editing Using Retrieval and Domain Feedback29 May 2023
- 2023A Group Symmetric Stochastic Differential Equation Model for Molecule Multi-modal Pretraining28 May 2023