Graph Pointer Neural Networks
Not on the map. Why?
Abstract (arXiv)
Graph Neural Networks (GNNs) have shown advantages in various graph-based applications. Most existing GNNs assume strong homophily of graph structure and apply permutation-invariant local aggregation of neighbors to learn a representation for each node. However, they fail to generalize to heterophilic graphs, where most neighboring nodes have different labels or features, and the relevant nodes are distant. Few recent studies attempt to address this problem by combining multiple hops of hidden representations of central nodes (i.e., multi-hop-based approaches) or sorting the neighboring nodes based on attention scores (i.e., ranking-based approaches). As a result, these approaches have some apparent limitations. On the one hand, multi-hop-based approaches do not explicitly distinguish relevant nodes from a large number of multi-hop neighborhoods, leading to a severe over-smoothing problem. On the other hand, ranking-based models do not joint-optimize node ranking with end tasks and result in sub-optimal solutions. In this work, we present Graph Pointer Neural Networks (GPNN) to tackle the challenges mentioned above. We leverage a pointer network to select the most relevant nodes from a large amount of multi-hop neighborhoods, which constructs an ordered sequence according to the relationship with the central node. 1D convolution is then applied to extract high-level features from the node sequence. The pointer-network-based ranker in GPNN is joint-optimized with other parts in an end-to-end manner. Extensive experiments are conducted on six public node classification datasets with heterophilic graphs. The results show that GPNN significantly improves the classification performance of state-of-the-art methods. In addition, analyses also reveal the privilege of the proposed GPNN in filtering out irrelevant neighbors and reducing over-smoothing.
Key facts. Cited by 27 papers in the map (data through 14 Oct 2026). Builds on 31 of its 38 references that are in the map. First posted on arXiv 3 Oct 2021.
Builds on
31 of 38 references.
References · 31
- 2017Attention Is All You Needcited by 60,361
- 2019PyTorch: An Imperative Style, High-Performance Deep Learning Librarycited by 20,305
- 2016Semi-Supervised Classification with Graph Convolutional Networkscited by 11,361
- 2017Graph Attention Networkscited by 8,923
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19 more
- 2018Predict then Propagate: Graph Neural Networks meet Personalized PageRankcited by 993
- 2015Pointer Networkscited by 895
- 2020Geom-GCN: Geometric Graph Convolutional Networkscited by 826
- 2018FastGCN: Fast Learning with Graph Convolutional Networks via Importance Samplingcited by 584
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- 2021Rethinking Graph Transformers with Spectral Attentioncited by 473
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- 2019Diffusion Improves Graph Learningcited by 414
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- 2018Large-Scale Learnable Graph Convolutional Networkscited by 113
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Citing papers per year: 2022: 4; 2023: 8; 2024: 7; 2025: 4; 2026: 4.
27 papers.
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- 2022Graph Neural Networks for Graphs with Heterophily: A Surveycited by 175
- 2022A Survey on Graph Representation Learning Methodscited by 66
- 2024Partitioning Message Passing for Graph Fraud Detectioncited by 23
- 2024Understanding Heterophily for Graph Neural Networkscited by 15
- 2022Boosting Graph Structure Learning with Dummy Nodescited by 13
- 2024A Survey on Learning from Graphs with Heterophily: Recent Advances and Future Directionscited by 13
- 2024SEFraud: Graph-based Self-Explainable Fraud Detection via Interpretative Mask Learningcited by 12
- 2023SIGMA: An Efficient Heterophilous Graph Neural Network with Fast Global Aggregationcited by 10
- 2023GraphRARE: Reinforcement Learning Enhanced Graph Neural Network with Relative Entropycited by 9
- 2023Heterophily-Aware Graph Attention Networkcited by 7
- 2023Finding Heterophilic Neighbors via Confidence-based Subgraph Matching for Semi-supervised Node Classificationcited by 7
- 2024Counterfactual Data Augmentation with Denoising Diffusion for Graph Anomaly Detectioncited by 7
15 more
- 2024The Heterophilic Snowflake Hypothesis: Training and Empowering GNNs for Heterophilic Graphscited by 6
- 2023A Survey on Service Route and Time Prediction in Instant Delivery: Taxonomy, Progress, and Prospectscited by 5
- 2023Learning to Branch in Combinatorial Optimization with Graph Pointer Networkscited by 4
- 2024Disambiguated Node Classification with Graph Neural Networkscited by 4
- 2023Mitigating Semantic Confusion from Hostile Neighborhood for Graph Active Learningcited by 3
- 2023CAT: A Causally Graph Attention Network for Trimming Heterophilic Graphcited by 2
- 2022A Bird's-Eye Tutorial of Graph Attention Architecturescited by 1
- 2025FedHERO: A Federated Learning Approach for Node Classification Task on Heterophilic Graphscited by 1
- 2026DynaTab: Dynamic Feature Ordering as Neural Rewiring for High-Dimensional Tabular Datacited by 1
- 2025HGFormer: A Hierarchical Graph Transformer Framework for Two-Stage Colonel Blotto Games via Reinforcement Learningcited by 0
- 2025Aggregation-aware MLP: An Unsupervised Approach for Graph Message-passingcited by 0
- 2025Learning to Design City-scale Transit Routescited by 0
- 2026Generating Diverse TSP Tours via a Combination of Graph Pointer Network and Dispersioncited by 0
- 2026CO-MAP: A Reinforcement Learning Approach to the Qubit Allocation Problemcited by 0
- 2026AlphaTransit: Learning to Design City-scale Transit Routescited by 0
- 2026AlphaTransit: Learning to Design City-scale Transit Routes27 May 2026
- 2026CO-MAP: A Reinforcement Learning Approach to the Qubit Allocation Problem13 May 2026
- 2026DynaTab: Dynamic Feature Ordering as Neural Rewiring for High-Dimensional Tabular Data5 May 2026
- 2026Generating Diverse TSP Tours via a Combination of Graph Pointer Network and Dispersion3 Jan 2026
- 2025Learning to Design City-scale Transit Routes21 Dec 2025
- 2025Aggregation-aware MLP: An Unsupervised Approach for Graph Message-passing27 Jul 2025
- 2025HGFormer: A Hierarchical Graph Transformer Framework for Two-Stage Colonel Blotto Games via Reinforcement Learning10 Jun 2025
- 2025FedHERO: A Federated Learning Approach for Node Classification Task on Heterophilic Graphs29 Apr 2025
- 2024Partitioning Message Passing for Graph Fraud Detection16 Nov 2024
- 2024Counterfactual Data Augmentation with Denoising Diffusion for Graph Anomaly Detection2 Jul 2024
- 2024The Heterophilic Snowflake Hypothesis: Training and Empowering GNNs for Heterophilic Graphs18 Jun 2024
- 2024SEFraud: Graph-based Self-Explainable Fraud Detection via Interpretative Mask Learning17 Jun 2024
15 more
- 2024Disambiguated Node Classification with Graph Neural Networks13 Feb 2024
- 2024A Survey on Learning from Graphs with Heterophily: Recent Advances and Future Directions18 Jan 2024
- 2024Understanding Heterophily for Graph Neural Networks17 Jan 2024
- 2023GraphRARE: Reinforcement Learning Enhanced Graph Neural Network with Relative Entropy15 Dec 2023
- 2023CAT: A Causally Graph Attention Network for Trimming Heterophilic Graph14 Dec 2023
- 2023A Survey on Service Route and Time Prediction in Instant Delivery: Taxonomy, Progress, and Prospects3 Sep 2023
- 2023Mitigating Semantic Confusion from Hostile Neighborhood for Graph Active Learning17 Aug 2023
- 2023Learning to Branch in Combinatorial Optimization with Graph Pointer Networks4 Jul 2023
- 2023SIGMA: An Efficient Heterophilous Graph Neural Network with Fast Global Aggregation17 May 2023
- 2023Finding Heterophilic Neighbors via Confidence-based Subgraph Matching for Semi-supervised Node Classification20 Feb 2023
- 2023Heterophily-Aware Graph Attention Network7 Feb 2023
- 2022Boosting Graph Structure Learning with Dummy Nodes17 Jun 2022
- 2022A Bird's-Eye Tutorial of Graph Attention Architectures6 Jun 2022
- 2022A Survey on Graph Representation Learning Methods4 Apr 2022
- 2022Graph Neural Networks for Graphs with Heterophily: A Survey14 Feb 2022
- 2022Graph Neural Networks for Graphs with Heterophily: A Surveycited by 175
- 2022A Survey on Graph Representation Learning Methodscited by 66
- 2024Partitioning Message Passing for Graph Fraud Detectioncited by 23
- 2024Understanding Heterophily for Graph Neural Networkscited by 15
- 2022Boosting Graph Structure Learning with Dummy Nodescited by 13
- 2024A Survey on Learning from Graphs with Heterophily: Recent Advances and Future Directionscited by 13
- 2024SEFraud: Graph-based Self-Explainable Fraud Detection via Interpretative Mask Learningcited by 12
- 2023SIGMA: An Efficient Heterophilous Graph Neural Network with Fast Global Aggregationcited by 10
- 2023GraphRARE: Reinforcement Learning Enhanced Graph Neural Network with Relative Entropycited by 9
- 2023Heterophily-Aware Graph Attention Networkcited by 7
- 2023Finding Heterophilic Neighbors via Confidence-based Subgraph Matching for Semi-supervised Node Classificationcited by 7
- 2024The Heterophilic Snowflake Hypothesis: Training and Empowering GNNs for Heterophilic Graphscited by 6
12 most cited of 24 All 24 (JSON)
- 2026AlphaTransit: Learning to Design City-scale Transit Routes27 May 2026
- 2026DynaTab: Dynamic Feature Ordering as Neural Rewiring for High-Dimensional Tabular Data5 May 2026
- 2026Generating Diverse TSP Tours via a Combination of Graph Pointer Network and Dispersion3 Jan 2026
- 2025Learning to Design City-scale Transit Routes21 Dec 2025
- 2025Aggregation-aware MLP: An Unsupervised Approach for Graph Message-passing27 Jul 2025
- 2025FedHERO: A Federated Learning Approach for Node Classification Task on Heterophilic Graphs29 Apr 2025
- 2024Partitioning Message Passing for Graph Fraud Detection16 Nov 2024
- 2024The Heterophilic Snowflake Hypothesis: Training and Empowering GNNs for Heterophilic Graphs18 Jun 2024
- 2024SEFraud: Graph-based Self-Explainable Fraud Detection via Interpretative Mask Learning17 Jun 2024
- 2024Disambiguated Node Classification with Graph Neural Networks13 Feb 2024
- 2024A Survey on Learning from Graphs with Heterophily: Recent Advances and Future Directions18 Jan 2024
- 2024Understanding Heterophily for Graph Neural Networks17 Jan 2024
12 newest of 24 All 24 (JSON)