Exploring a Unified Sequence-To-Sequence Transformer for Medical Product Safety Monitoring in Social Media
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Abstract (arXiv)
Adverse Events (AE) are harmful events resulting from the use of medical products. Although social media may be crucial for early AE detection, the sheer scale of this data makes it logistically intractable to analyze using human agents, with NLP representing the only low-cost and scalable alternative. In this paper, we frame AE Detection and Extraction as a sequence-to-sequence problem using the T5 model architecture and achieve strong performance improvements over competitive baselines on several English benchmarks (F1 = 0.71, 12.7% relative improvement for AE Detection; Strict F1 = 0.713, 12.4% relative improvement for AE Extraction). Motivated by the strong commonalities between AE-related tasks, the class imbalance in AE benchmarks and the linguistic and structural variety typical of social media posts, we propose a new strategy for multi-task training that accounts, at the same time, for task and dataset characteristics. Our multi-task approach increases model robustness, leading to further performance gains. Finally, our framework shows some language transfer capabilities, obtaining higher performance than Multilingual BERT in zero-shot learning on French data.
Key facts. Cited by 9 papers in the map (data through 14 Oct 2026). Builds on 17 of its 40 references that are in the map. First posted on arXiv 13 Sep 2021.
Builds on
17 of 40 references.
References · 17
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5 more
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Citing papers per year: 2022: 2; 2023: 3; 2024: 4.
9 papers.
- 2022Thinking about GPT-3 In-Context Learning for Biomedical IE? Think Againcited by 83
- 2023Transformers in Healthcare: A Surveycited by 17
- 2023Extensive Evaluation of Transformer-based Architectures for Adverse Drug Events Extractioncited by 4
- 2022Cross-lingual Approaches for the Detection of Adverse Drug Reactions in German from a Patient's Perspectivecited by 1
- 2024MultiADE: A Multi-domain Benchmark for Adverse Drug Event Extractioncited by 1
- 2024GPT-3 Powered Information Extraction for Building Robust Knowledge Basescited by 1
- 2023KESDT: knowledge enhanced shallow and deep Transformer for detecting adverse drug reactionscited by 0
- 2024A Dataset for Pharmacovigilance in German, French, and Japanese: Annotating Adverse Drug Reactions across Languagescited by 0
- 2024ADEQA: A Question Answer based approach for joint ADE-Suspect Extraction using Sequence-To-Sequence Transformerscited by 0
- 2024ADEQA: A Question Answer based approach for joint ADE-Suspect Extraction using Sequence-To-Sequence Transformers20 Dec 2024
- 2024GPT-3 Powered Information Extraction for Building Robust Knowledge Bases31 Jul 2024
- 2024MultiADE: A Multi-domain Benchmark for Adverse Drug Event Extraction28 May 2024
- 2024A Dataset for Pharmacovigilance in German, French, and Japanese: Annotating Adverse Drug Reactions across Languages27 Mar 2024
- 2023KESDT: knowledge enhanced shallow and deep Transformer for detecting adverse drug reactions18 Aug 2023
- 2023Transformers in Healthcare: A Survey30 Jun 2023
- 2023Extensive Evaluation of Transformer-based Architectures for Adverse Drug Events Extraction8 Jun 2023
- 2022Cross-lingual Approaches for the Detection of Adverse Drug Reactions in German from a Patient's Perspective3 Aug 2022
- 2022Thinking about GPT-3 In-Context Learning for Biomedical IE? Think Again16 Mar 2022