Edge Representation Learning with Hypergraphs
Not on the map. Why?
Abstract (arXiv)
Graph neural networks have recently achieved remarkable success in representing graph-structured data, with rapid progress in both the node embedding and graph pooling methods. Yet, they mostly focus on capturing information from the nodes considering their connectivity, and not much work has been done in representing the edges, which are essential components of a graph. However, for tasks such as graph reconstruction and generation, as well as graph classification tasks for which the edges are important for discrimination, accurately representing edges of a given graph is crucial to the success of the graph representation learning. To this end, we propose a novel edge representation learning framework based on Dual Hypergraph Transformation (DHT), which transforms the edges of a graph into the nodes of a hypergraph. This dual hypergraph construction allows us to apply message-passing techniques for node representations to edges. After obtaining edge representations from the hypergraphs, we then cluster or drop edges to obtain holistic graph-level edge representations. We validate our edge representation learning method with hypergraphs on diverse graph datasets for graph representation and generation performance, on which our method largely outperforms existing graph representation learning methods. Moreover, our edge representation learning and pooling method also largely outperforms state-of-the-art graph pooling methods on graph classification, not only because of its accurate edge representation learning, but also due to its lossless compression of the nodes and removal of irrelevant edges for effective message-passing.
Key facts. Cited by 37 papers in the map (data through 7 Oct 2026). Builds on 39 of its 72 references that are in the map. First posted on arXiv 30 Jun 2021.
Builds on
39 of 72 references.
References · 39
- 2014Adam: A Method for Stochastic Optimizationcited by 36,960
- 2019PyTorch: An Imperative Style, High-Performance Deep Learning Librarycited by 20,160
- 2016Semi-Supervised Classification with Graph Convolutional Networkscited by 11,282
- 2017Graph Attention Networkscited by 8,854
- 2015Batch Normalization: Accelerating Deep Network Training by Reducing Internal Covariate Shiftcited by 6,979
- 2017Inductive Representation Learning on Large Graphscited by 6,284
- 2018How Powerful are Graph Neural Networks?cited by 4,355
- 2017Neural Message Passing for Quantum Chemistrycited by 3,460
- 2019A Comprehensive Survey on Graph Neural Networkscited by 2,906
- 2019Fast Graph Representation Learning with PyTorch Geometriccited by 2,414
- 2020Open Graph Benchmark: Datasets for Machine Learning on Graphscited by 2,148
- 2017Modeling Relational Data with Graph Convolutional Networkscited by 1,684
27 more
- 2018Graph Neural Networks: A Review of Methods and Applicationscited by 1,571
- 2017Deep Setscited by 1,394
- 2018Deeper Insights into Graph Convolutional Networks for Semi-Supervised Learningcited by 1,099
- 2019Strategies for Pre-training Graph Neural Networkscited by 964
- 2018Hierarchical Graph Representation Learning with Differentiable Poolingcited by 786
- 2020TUDataset: A collection of benchmark datasets for learning with graphscited by 718
- 2019DropEdge: Towards Deep Graph Convolutional Networks on Node Classificationcited by 679
- 2020Benchmarking Graph Neural Networkscited by 672
- 2019Graph U-Netscited by 489
- 2018Hypergraph Neural Networkscited by 482
- 2019Self-Attention Graph Poolingcited by 421
- 2019Composition-based Multi-Relational Graph Convolutional Networkscited by 395
- 2018MolGAN: An implicit generative model for small molecular graphscited by 392
- 2016Learning Convolutional Neural Networks for Graphscited by 314
- 2017Dynamic Edge-Conditioned Filters in Convolutional Neural Networks on Graphscited by 307
- 2015Diffusion-Convolutional Neural Networkscited by 268
- 2019A Fair Comparison of Graph Neural Networks for Graph Classificationcited by 244
- 2020Graph Random Neural Network for Semi-Supervised Learning on Graphscited by 213
- 2020Combining Label Propagation and Simple Models Out-performs Graph Neural Networkscited by 199
- 2019ASAP: Adaptive Structure Aware Pooling for Learning Hierarchical Graph Representationscited by 156
- 2021MARS: Markov Molecular Sampling for Multi-objective Drug Discoverycited by 125
- 2021Accurate Learning of Graph Representations with Graph Multiset Poolingcited by 120
- 2018Molecular Hypergraph Grammar with its Application to Molecular Optimizationcited by 56
- 2019Edge Contraction Pooling for Graph Neural Networkscited by 53
- 2018Dual-Primal Graph Convolutional Networkscited by 18
- 2017Classification in biological networks with hypergraphlet kernelscited by 9
- 2019Haar Graph Poolingcited by 4
Built on by
Citing papers per year: 2022: 9; 2023: 13; 2024: 7; 2025: 7; 2026: 1.
37 papers.
Sort:
By area:
- 2022Graph neural networks for materials science and chemistrycited by 181
- 2022Personalized Subgraph Federated Learningcited by 54
- 2022Multimodal learning with graphscited by 54
- 2023Knowledge Graph-Augmented Language Models for Knowledge-Grounded Dialogue Generationcited by 54
- 2022Graph Pooling for Graph Neural Networks: Progress, Challenges, and Opportunitiescited by 52
- 2023Deciphering Spatio-Temporal Graph Forecasting: A Causal Lens and Treatmentcited by 47
- 2022Equivariant Hypergraph Diffusion Neural Operatorscited by 45
- 2023Towards Self-Interpretable Graph-Level Anomaly Detectioncited by 41
- 2023Edgeformers: Graph-Empowered Transformers for Representation Learning on Textual-Edge Networkscited by 23
- 2025Graph-based Approaches and Functionalities in Retrieval-Augmented Generation: A Comprehensive Surveycited by 18
- 2022Line Graph Contrastive Learning for Link Predictioncited by 13
- 2022GRATIS: Deep Learning Graph Representation with Task-specific Topology and Multi-dimensional Edge Featurescited by 12
25 more
- 2023Molecular Hypergraph Neural Networkscited by 7
- 2023Heterogeneous Graph Convolutional Neural Network via Hodge-Laplacian for Brain Functional Datacited by 6
- 2023Beyond the Snapshot: Brain Tokenized Graph Transformer for Longitudinal Brain Functional Connectome Embeddingcited by 6
- 2023BOURNE: Bootstrapped Self-supervised Learning Framework for Unified Graph Anomaly Detectioncited by 6
- 2024A Comprehensive Graph Pooling Benchmark: Effectiveness, Robustness and Generalizabilitycited by 6
- 2023Dynamic Spatial-temporal Hypergraph Convolutional Network for Skeleton-based Action Recognitioncited by 4
- 2024Graph Parsing Networkscited by 4
- 2023Neural Lattice Reduction: A Self-Supervised Geometric Deep Learning Approachcited by 3
- 2024Effective Edge-wise Representation Learning in Edge-Attributed Bipartite Graphscited by 3
- 2023Learning Resource Allocation Policy: Vertex-GNN or Edge-GNN?cited by 2
- 2024Modeling Edge-Specific Node Features through Co-Representation Neural Hypergraph Diffusioncited by 2
- 2024Graph Neural Networks for Edge Signals: Orientation Equivariance and Invariancecited by 2
- 2025Self-Explaining Hypergraph Neural Networks for Diagnosis Predictioncited by 2
- 2025Enhancing Homophily-Heterophily Separation: Relation-Aware Learning in Heterogeneous Graphscited by 2
- 2022Spiking Variational Graph Auto-Encoders for Efficient Graph Representation Learningcited by 1
- 2023GRANDE: a neural model over directed multigraphs with application to anti-money launderingcited by 1
- 2024Advancing Graph Neural Networks with HL-HGAT: A Hodge-Laplacian and Attention Mechanism Approach for Heterogeneous Graph-Structured Datacited by 1
- 2024Topological Cycle Graph Attention Network for Brain Functional Connectivitycited by 1
- 2025FedGrAINS: Personalized SubGraph Federated Learning with Adaptive Neighbor Samplingcited by 1
- 2025Two-dimensional Taxonomy for N-ary Knowledge Representation Learning Methodscited by 1
- 2022Object Detection in Aerial Images with Uncertainty-Aware Graph Networkcited by 0
- 2023Subgraph Networks Based Contrastive Learningcited by 0
- 2025SAFT: Structure-aware Transformers for Textual Interaction Classificationcited by 0
- 2025GNN-Enabled Robust Hybrid Beamforming with Score-Based CSI Generation and Denoisingcited by 0
- 2026Learning Multi-Scale Hypergraph for High-Order Brain Connectivity Analysiscited by 0
- 2026Learning Multi-Scale Hypergraph for High-Order Brain Connectivity Analysis2 Jun 2026
- 2025GNN-Enabled Robust Hybrid Beamforming with Score-Based CSI Generation and Denoising10 Nov 2025
- 2025Enhancing Homophily-Heterophily Separation: Relation-Aware Learning in Heterogeneous Graphs26 Jun 2025
- 2025Two-dimensional Taxonomy for N-ary Knowledge Representation Learning Methods5 Jun 2025
- 2025Graph-based Approaches and Functionalities in Retrieval-Augmented Generation: A Comprehensive Survey8 Apr 2025
- 2025SAFT: Structure-aware Transformers for Textual Interaction Classification7 Apr 2025
- 2025Self-Explaining Hypergraph Neural Networks for Diagnosis Prediction15 Feb 2025
- 2025FedGrAINS: Personalized SubGraph Federated Learning with Adaptive Neighbor Sampling22 Jan 2025
- 2024Graph Neural Networks for Edge Signals: Orientation Equivariance and Invariance22 Oct 2024
- 2024Effective Edge-wise Representation Learning in Edge-Attributed Bipartite Graphs19 Jun 2024
- 2024A Comprehensive Graph Pooling Benchmark: Effectiveness, Robustness and Generalizability13 Jun 2024
- 2024Modeling Edge-Specific Node Features through Co-Representation Neural Hypergraph Diffusion23 May 2024
25 more
- 2024Topological Cycle Graph Attention Network for Brain Functional Connectivity28 Mar 2024
- 2024Advancing Graph Neural Networks with HL-HGAT: A Hodge-Laplacian and Attention Mechanism Approach for Heterogeneous Graph-Structured Data11 Mar 2024
- 2024Graph Parsing Networks22 Feb 2024
- 2023Molecular Hypergraph Neural Networks20 Dec 2023
- 2023Neural Lattice Reduction: A Self-Supervised Geometric Deep Learning Approach14 Nov 2023
- 2023Towards Self-Interpretable Graph-Level Anomaly Detection25 Oct 2023
- 2023Deciphering Spatio-Temporal Graph Forecasting: A Causal Lens and Treatment23 Sep 2023
- 2023BOURNE: Bootstrapped Self-supervised Learning Framework for Unified Graph Anomaly Detection28 Jul 2023
- 2023Learning Resource Allocation Policy: Vertex-GNN or Edge-GNN?24 Jul 2023
- 2023Beyond the Snapshot: Brain Tokenized Graph Transformer for Longitudinal Brain Functional Connectome Embedding3 Jul 2023
- 2023Subgraph Networks Based Contrastive Learning6 Jun 2023
- 2023Knowledge Graph-Augmented Language Models for Knowledge-Grounded Dialogue Generation30 May 2023
- 2023Edgeformers: Graph-Empowered Transformers for Representation Learning on Textual-Edge Networks21 Feb 2023
- 2023Heterogeneous Graph Convolutional Neural Network via Hodge-Laplacian for Brain Functional Data18 Feb 2023
- 2023Dynamic Spatial-temporal Hypergraph Convolutional Network for Skeleton-based Action Recognition17 Feb 2023
- 2023GRANDE: a neural model over directed multigraphs with application to anti-money laundering4 Feb 2023
- 2022GRATIS: Deep Learning Graph Representation with Task-specific Topology and Multi-dimensional Edge Features19 Nov 2022
- 2022Line Graph Contrastive Learning for Link Prediction25 Oct 2022
- 2022Spiking Variational Graph Auto-Encoders for Efficient Graph Representation Learning24 Oct 2022
- 2022Multimodal learning with graphs7 Sep 2022
- 2022Object Detection in Aerial Images with Uncertainty-Aware Graph Network23 Aug 2022
- 2022Graph neural networks for materials science and chemistry5 Aug 2022
- 2022Equivariant Hypergraph Diffusion Neural Operators14 Jul 2022
- 2022Personalized Subgraph Federated Learning21 Jun 2022
- 2022Graph Pooling for Graph Neural Networks: Progress, Challenges, and Opportunities15 Apr 2022
- 2022Graph neural networks for materials science and chemistrycited by 181
- 2022Personalized Subgraph Federated Learningcited by 54
- 2022Multimodal learning with graphscited by 54
- 2023Knowledge Graph-Augmented Language Models for Knowledge-Grounded Dialogue Generationcited by 54
- 2022Graph Pooling for Graph Neural Networks: Progress, Challenges, and Opportunitiescited by 52
- 2023Deciphering Spatio-Temporal Graph Forecasting: A Causal Lens and Treatmentcited by 47
- 2022Equivariant Hypergraph Diffusion Neural Operatorscited by 45
- 2023Towards Self-Interpretable Graph-Level Anomaly Detectioncited by 41
- 2023Edgeformers: Graph-Empowered Transformers for Representation Learning on Textual-Edge Networkscited by 23
- 2022Line Graph Contrastive Learning for Link Predictioncited by 13
- 2022GRATIS: Deep Learning Graph Representation with Task-specific Topology and Multi-dimensional Edge Featurescited by 12
- 2023Molecular Hypergraph Neural Networkscited by 7
12 most cited of 36 All 36 (JSON)
- 2026Learning Multi-Scale Hypergraph for High-Order Brain Connectivity Analysis2 Jun 2026
- 2025GNN-Enabled Robust Hybrid Beamforming with Score-Based CSI Generation and Denoising10 Nov 2025
- 2025Enhancing Homophily-Heterophily Separation: Relation-Aware Learning in Heterogeneous Graphs26 Jun 2025
- 2025Two-dimensional Taxonomy for N-ary Knowledge Representation Learning Methods5 Jun 2025
- 2025SAFT: Structure-aware Transformers for Textual Interaction Classification7 Apr 2025
- 2025Self-Explaining Hypergraph Neural Networks for Diagnosis Prediction15 Feb 2025
- 2025FedGrAINS: Personalized SubGraph Federated Learning with Adaptive Neighbor Sampling22 Jan 2025
- 2024Graph Neural Networks for Edge Signals: Orientation Equivariance and Invariance22 Oct 2024
- 2024Effective Edge-wise Representation Learning in Edge-Attributed Bipartite Graphs19 Jun 2024
- 2024A Comprehensive Graph Pooling Benchmark: Effectiveness, Robustness and Generalizability13 Jun 2024
- 2024Modeling Edge-Specific Node Features through Co-Representation Neural Hypergraph Diffusion23 May 2024
- 2024Topological Cycle Graph Attention Network for Brain Functional Connectivity28 Mar 2024
12 newest of 36 All 36 (JSON)