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Fine-Grained System Identification of Nonlinear Neural Circuits

arXiv 2106.05400 ↗First posted 9 Jun 2021q-bio.QM cs.LGcited by 0

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Abstract (arXiv)

We study the problem of sparse nonlinear model recovery of high dimensional compositional functions. Our study is motivated by emerging opportunities in neuroscience to recover fine-grained models of biological neural circuits using collected measurement data. Guided by available domain knowledge in neuroscience, we explore conditions under which one can recover the underlying biological circuit that generated the training data. Our results suggest insights of both theoretical and practical interests. Most notably, we find that a sign constraint on the weights is a necessary condition for system recovery, which we establish both theoretically with an identifiability guarantee and empirically on simulated biological circuits. We conclude with a case study on retinal ganglion cell circuits using data collected from mouse retina, showcasing the practical potential of this approach.

Key facts. No citing papers in the map yet (data through 7 Oct 2026). Builds on 8 of its 65 references that are in the map. First posted on arXiv 9 Jun 2021.

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References · 8

  1. 2014Adam: A Method for Stochastic Optimizationcited by 36,960
  2. 2014Microsoft COCO: Common Objects in Contextcited by 17,498
  3. 2018DAGs with NO TEARS: Continuous Optimization for Structure Learningcited by 745
  4. 2017Deep Learning Models of the Retinal Response to Natural Scenescited by 36
  5. 2017Neural system identification for large populations separating "what" and "where"cited by 28
  6. 2020Causal Structure Discovery from Distributions Arising from Mixtures of DAGscited by 24
  7. 2019Neural network identifiability for a family of sigmoidal nonlinearitiescited by 14
  8. 2019From deep learning to mechanistic understanding in neuroscience: the structure of retinal predictioncited by 11

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