Graph convolutions that can finally model local structure
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Abstract (arXiv)
Despite quick progress in the last few years, recent studies have shown that modern graph neural networks can still fail at very simple tasks, like detecting small cycles. This hints at the fact that current networks fail to catch information about the local structure, which is problematic if the downstream task heavily relies on graph substructure analysis, as in the context of chemistry. We propose a very simple correction to the now standard GIN convolution that enables the network to detect small cycles with nearly no cost in terms of computation time and number of parameters. Tested on real life molecule property datasets, our model consistently improves performance on large multi-tasked datasets over all baselines, both globally and on a per-task setting.
Key facts. Cited by 31 papers in the map (data through 7 Oct 2026). First posted on arXiv 30 Nov 2020.
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Citing papers per year: 2021: 7; 2022: 7; 2023: 7; 2024: 6; 2025: 1; 2026: 3.
31 papers.
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- 2021Do Transformers Really Perform Bad for Graph Representation?cited by 318
- 2021Nested Graph Neural Networkscited by 136
- 2023Meta-Transformer: A Unified Framework for Multimodal Learningcited by 136
- 2021Global Self-Attention as a Replacement for Graph Convolutioncited by 113
- 2022How Powerful are K-hop Message Passing Graph Neural Networkscited by 90
- 2022One Transformer Can Understand Both 2D & 3D Molecular Datacited by 77
- 2022GRPE: Relative Positional Encoding for Graph Transformercited by 67
- 2022Your Transformer May Not be as Powerful as You Expectcited by 55
- 2021Walking Out of the Weisfeiler Leman Hierarchy: Graph Learning Beyond Message Passingcited by 46
- 2021Autobahn: Automorphism-based Graph Neural Netscited by 39
- 2023The Expressive Power of Graph Neural Networks: A Surveycited by 27
- 2021A New Perspective on the Effects of Spectrum in Graph Neural Networkscited by 24
19 more
- 2023Highly Accurate Quantum Chemical Property Prediction with Uni-Mol+cited by 22
- 2023GraphGPT: Generative Pre-trained Graph Eulerian Transformercited by 15
- 2024Triplet Interaction Improves Graph Transformers: Accurate Molecular Graph Learning with Triplet Graph Transformerscited by 12
- 2023Graph Propagation Transformer for Graph Representation Learningcited by 9
- 2024Improving the Expressiveness of K-hop Message-Passing GNNs by Injecting Contextualized Substructure Informationcited by 9
- 2024GeoMFormer: A General Architecture for Geometric Molecular Representation Learningcited by 6
- 2022Equilibrium Aggregation: Encoding Sets via Optimizationcited by 5
- 2022GEM-2: Next Generation Molecular Property Prediction Network by Modeling Full-range Many-body Interactionscited by 5
- 2023Towards Better Graph Representation Learning with Parameterized Decomposition & Filteringcited by 4
- 2024Demystifying Higher-Order Graph Neural Networkscited by 4
- 2021RAN-GNNs: breaking the capacity limits of graph neural networkscited by 3
- 2026Enhancing Molecular Property Predictions by Learning from Bond Modelling and Interactionscited by 3
- 2022HelixADMET: a robust and endpoint extensible ADMET system incorporating self-supervised knowledge transfercited by 1
- 2024GNN Applied to Ego-nets for Friend Suggestionscited by 1
- 2026FloydNet: A Learning Paradigm for Global Relational Reasoningcited by 1
- 2023Rethinking the Power of Graph Canonization in Graph Representation Learning with Stabilitycited by 0
- 2024Sampling Foundational Transformer: A Theoretical Perspectivecited by 0
- 2025Exact Subgraph Isomorphism Network with Mixed L0,2 Norm Constraint for Predictive Graph Miningcited by 0
- 2026GeoGAE: Scalable Graph-Level Autoencoding via Hyperball Cloud Representationscited by 0
- 2026GeoGAE: Scalable Graph-Level Autoencoding via Hyperball Cloud Representations28 Sep 2026
- 2026Enhancing Molecular Property Predictions by Learning from Bond Modelling and Interactions28 Feb 2026
- 2026FloydNet: A Learning Paradigm for Global Relational Reasoning27 Jan 2026
- 2025Exact Subgraph Isomorphism Network with Mixed L0,2 Norm Constraint for Predictive Graph Mining25 Sep 2025
- 2024GNN Applied to Ego-nets for Friend Suggestions16 Dec 2024
- 2024Sampling Foundational Transformer: A Theoretical Perspective11 Aug 2024
- 2024Improving the Expressiveness of K-hop Message-Passing GNNs by Injecting Contextualized Substructure Information27 Jun 2024
- 2024GeoMFormer: A General Architecture for Geometric Molecular Representation Learning24 Jun 2024
- 2024Demystifying Higher-Order Graph Neural Networks18 Jun 2024
- 2024Triplet Interaction Improves Graph Transformers: Accurate Molecular Graph Learning with Triplet Graph Transformers7 Feb 2024
- 2023GraphGPT: Generative Pre-trained Graph Eulerian Transformer31 Dec 2023
- 2023Rethinking the Power of Graph Canonization in Graph Representation Learning with Stability1 Sep 2023
19 more
- 2023The Expressive Power of Graph Neural Networks: A Survey16 Aug 2023
- 2023Meta-Transformer: A Unified Framework for Multimodal Learning20 Jul 2023
- 2023Graph Propagation Transformer for Graph Representation Learning19 May 2023
- 2023Towards Better Graph Representation Learning with Parameterized Decomposition & Filtering10 May 2023
- 2023Highly Accurate Quantum Chemical Property Prediction with Uni-Mol+16 Mar 2023
- 2022One Transformer Can Understand Both 2D & 3D Molecular Data4 Oct 2022
- 2022GEM-2: Next Generation Molecular Property Prediction Network by Modeling Full-range Many-body Interactions11 Aug 2022
- 2022Your Transformer May Not be as Powerful as You Expect26 May 2022
- 2022How Powerful are K-hop Message Passing Graph Neural Networks26 May 2022
- 2022HelixADMET: a robust and endpoint extensible ADMET system incorporating self-supervised knowledge transfer17 May 2022
- 2022Equilibrium Aggregation: Encoding Sets via Optimization25 Feb 2022
- 2022GRPE: Relative Positional Encoding for Graph Transformer30 Jan 2022
- 2021A New Perspective on the Effects of Spectrum in Graph Neural Networks14 Dec 2021
- 2021Nested Graph Neural Networks25 Oct 2021
- 2021Global Self-Attention as a Replacement for Graph Convolution7 Aug 2021
- 2021Do Transformers Really Perform Bad for Graph Representation?9 Jun 2021
- 2021RAN-GNNs: breaking the capacity limits of graph neural networks29 Mar 2021
- 2021Autobahn: Automorphism-based Graph Neural Nets2 Mar 2021
- 2021Walking Out of the Weisfeiler Leman Hierarchy: Graph Learning Beyond Message Passing17 Feb 2021
- 2021Do Transformers Really Perform Bad for Graph Representation?cited by 318
- 2021Nested Graph Neural Networkscited by 136
- 2023Meta-Transformer: A Unified Framework for Multimodal Learningcited by 136
- 2021Global Self-Attention as a Replacement for Graph Convolutioncited by 113
- 2022How Powerful are K-hop Message Passing Graph Neural Networkscited by 90
- 2022One Transformer Can Understand Both 2D & 3D Molecular Datacited by 77
- 2022GRPE: Relative Positional Encoding for Graph Transformercited by 67
- 2022Your Transformer May Not be as Powerful as You Expectcited by 55
- 2021Walking Out of the Weisfeiler Leman Hierarchy: Graph Learning Beyond Message Passingcited by 46
- 2021Autobahn: Automorphism-based Graph Neural Netscited by 39
- 2023The Expressive Power of Graph Neural Networks: A Surveycited by 27
- 2021A New Perspective on the Effects of Spectrum in Graph Neural Networkscited by 24
12 most cited of 31 All 31 (JSON)
- 2026GeoGAE: Scalable Graph-Level Autoencoding via Hyperball Cloud Representations28 Sep 2026
- 2026Enhancing Molecular Property Predictions by Learning from Bond Modelling and Interactions28 Feb 2026
- 2026FloydNet: A Learning Paradigm for Global Relational Reasoning27 Jan 2026
- 2025Exact Subgraph Isomorphism Network with Mixed L0,2 Norm Constraint for Predictive Graph Mining25 Sep 2025
- 2024GNN Applied to Ego-nets for Friend Suggestions16 Dec 2024
- 2024Sampling Foundational Transformer: A Theoretical Perspective11 Aug 2024
- 2024Improving the Expressiveness of K-hop Message-Passing GNNs by Injecting Contextualized Substructure Information27 Jun 2024
- 2024GeoMFormer: A General Architecture for Geometric Molecular Representation Learning24 Jun 2024
- 2024Demystifying Higher-Order Graph Neural Networks18 Jun 2024
- 2024Triplet Interaction Improves Graph Transformers: Accurate Molecular Graph Learning with Triplet Graph Transformers7 Feb 2024
- 2023GraphGPT: Generative Pre-trained Graph Eulerian Transformer31 Dec 2023
- 2023Rethinking the Power of Graph Canonization in Graph Representation Learning with Stability1 Sep 2023
12 newest of 31 All 31 (JSON)