Time Series Data Imputation: A Survey on Deep Learning Approaches
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Abstract (arXiv)
Time series are all around in real-world applications. However, unexpected accidents for example broken sensors or missing of the signals will cause missing values in time series, making the data hard to be utilized. It then does harm to the downstream applications such as traditional classification or regression, sequential data integration and forecasting tasks, thus raising the demand for data imputation. Currently, time series data imputation is a well-studied problem with different categories of methods. However, these works rarely take the temporal relations among the observations and treat the time series as normal structured data, losing the information from the time data. In recent, deep learning models have raised great attention. Time series methods based on deep learning have made progress with the usage of models like RNN, since it captures time information from data. In this paper, we mainly focus on time series imputation technique with deep learning methods, which recently made progress in this field. We will review and discuss their model architectures, their pros and cons as well as their effects to show the development of the time series imputation methods.
Key facts. Cited by 34 papers in the map (data through 7 Oct 2026). First posted on arXiv 23 Nov 2020.
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Citing papers per year: 2021: 3; 2022: 5; 2023: 9; 2024: 9; 2025: 5; 2026: 3.
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- 2022Diffusion-based Time Series Imputation and Forecasting with Structured State Space Modelscited by 195
- 2024Deep Time Series Models: A Comprehensive Survey and Benchmarkcited by 191
- 2023A Survey on Graph Neural Networks for Time Series: Forecasting, Classification, Imputation, and Anomaly Detectioncited by 145
- 2021Graph-Guided Network for Irregularly Sampled Multivariate Time Seriescited by 110
- 2021Time Series Prediction using Deep Learning Methods in Healthcarecited by 71
- 2024Deep Learning for Multivariate Time Series Imputation: A Surveycited by 57
- 2023ImDiffusion: Imputed Diffusion Models for Multivariate Time Series Anomaly Detectioncited by 38
- 2024TSI-Bench: Benchmarking Time Series Imputationcited by 33
- 2023Networked Time Series Imputation via Position-aware Graph Enhanced Variational Autoencoderscited by 32
- 2023Deep Imputation of Missing Values in Time Series Health Data: A Review with Benchmarkingcited by 29
- 2023TACTiS-2: Better, Faster, Simpler Attentional Copulas for Multivariate Time Seriescited by 25
- 2022HyperTime: Implicit Neural Representation for Time Seriescited by 24
22 more
- 2025Foundation Models for Time Series: A Surveycited by 19
- 2022Time Series Generation with Masked Autoencodercited by 12
- 2023BayOTIDE: Bayesian Online Multivariate Time series Imputation with functional decompositioncited by 9
- 2024Higher-order Spatio-temporal Physics-incorporated Graph Neural Network for Multivariate Time Series Imputationcited by 8
- 2025From Samples to Scenarios: A New Paradigm for Probabilistic Forecastingcited by 8
- 2024How Deep is your Guess? A Fresh Perspective on Deep Learning for Medical Time-Series Imputationcited by 5
- 2025Foundation Models for Environmental Science: A Survey of Emerging Frontierscited by 4
- 2024Early Prediction of Causes (not Effects) in Healthcare by Long-Term Clinical Time Series Forecastingcited by 3
- 2021DeepFIB: Self-Imputation for Time Series Anomaly Detectioncited by 2
- 2024Using matrix-product states for time-series machine learningcited by 2
- 2022Convolutional Neural Networks for Time-dependent Classification of Variable-length Time Seriescited by 1
- 2022Multistage Large Segment Imputation Framework Based on Deep Learning and Statistic Metricscited by 0
- 2023A robust deep learning-based damage identification approach for SHM considering missing datacited by 0
- 2023Using Autoencoders and AutoDiff to Reconstruct Missing Variables in a Set of Time Seriescited by 0
- 2023Comparative Analysis of Transformers for Modeling Tabular Data: A Casestudy using Industry Scale Datasetcited by 0
- 2024Is Precise Recovery Necessary? A Task-Oriented Imputation Approach for Time Series Forecasting on Variable Subsetcited by 0
- 2024A Survey and Benchmarking of Spatial-Temporal Traffic Data Imputation Modelscited by 0
- 2025Diffusion Transformers for Imputation: Statistical Efficiency and Uncertainty Quantificationcited by 0
- 2025An Interdisciplinary and Cross-Task Review on Missing Data Imputationcited by 0
- 2026DeMa: Dual-Path Delay-Aware Mamba for Efficient Multivariate Time Series Analysiscited by 0
- 2026Spatiotemporal System Forecasting with Irregular Time Steps via Masked Autoencodercited by 0
- 2026MBDiff: Multi-view Behavior-aware Diffusion Model for Probabilistic Utility Data Imputationcited by 0
- 2026MBDiff: Multi-view Behavior-aware Diffusion Model for Probabilistic Utility Data Imputation31 Jul 2026
- 2026Spatiotemporal System Forecasting with Irregular Time Steps via Masked Autoencoder26 Mar 2026
- 2026DeMa: Dual-Path Delay-Aware Mamba for Efficient Multivariate Time Series Analysis9 Jan 2026
- 2025An Interdisciplinary and Cross-Task Review on Missing Data Imputation3 Nov 2025
- 2025Diffusion Transformers for Imputation: Statistical Efficiency and Uncertainty Quantification2 Oct 2025
- 2025From Samples to Scenarios: A New Paradigm for Probabilistic Forecasting24 Sep 2025
- 2025Foundation Models for Environmental Science: A Survey of Emerging Frontiers5 Apr 2025
- 2025Foundation Models for Time Series: A Survey5 Apr 2025
- 2024Using matrix-product states for time-series machine learning20 Dec 2024
- 2024A Survey and Benchmarking of Spatial-Temporal Traffic Data Imputation Models6 Dec 2024
- 2024Is Precise Recovery Necessary? A Task-Oriented Imputation Approach for Time Series Forecasting on Variable Subset15 Nov 2024
- 2024Early Prediction of Causes (not Effects) in Healthcare by Long-Term Clinical Time Series Forecasting7 Aug 2024
22 more
- 2024Deep Time Series Models: A Comprehensive Survey and Benchmark18 Jul 2024
- 2024How Deep is your Guess? A Fresh Perspective on Deep Learning for Medical Time-Series Imputation11 Jul 2024
- 2024TSI-Bench: Benchmarking Time Series Imputation18 Jun 2024
- 2024Higher-order Spatio-temporal Physics-incorporated Graph Neural Network for Multivariate Time Series Imputation16 May 2024
- 2024Deep Learning for Multivariate Time Series Imputation: A Survey6 Feb 2024
- 2023Comparative Analysis of Transformers for Modeling Tabular Data: A Casestudy using Industry Scale Dataset24 Nov 2023
- 2023TACTiS-2: Better, Faster, Simpler Attentional Copulas for Multivariate Time Series2 Oct 2023
- 2023BayOTIDE: Bayesian Online Multivariate Time series Imputation with functional decomposition28 Aug 2023
- 2023Using Autoencoders and AutoDiff to Reconstruct Missing Variables in a Set of Time Series21 Aug 2023
- 2023A Survey on Graph Neural Networks for Time Series: Forecasting, Classification, Imputation, and Anomaly Detection7 Jul 2023
- 2023ImDiffusion: Imputed Diffusion Models for Multivariate Time Series Anomaly Detection3 Jul 2023
- 2023Networked Time Series Imputation via Position-aware Graph Enhanced Variational Autoencoders29 May 2023
- 2023A robust deep learning-based damage identification approach for SHM considering missing data31 Mar 2023
- 2023Deep Imputation of Missing Values in Time Series Health Data: A Review with Benchmarking10 Feb 2023
- 2022Multistage Large Segment Imputation Framework Based on Deep Learning and Statistic Metrics22 Sep 2022
- 2022Diffusion-based Time Series Imputation and Forecasting with Structured State Space Models19 Aug 2022
- 2022HyperTime: Implicit Neural Representation for Time Series11 Aug 2022
- 2022Convolutional Neural Networks for Time-dependent Classification of Variable-length Time Series8 Jul 2022
- 2022Time Series Generation with Masked Autoencoder14 Jan 2022
- 2021DeepFIB: Self-Imputation for Time Series Anomaly Detection12 Dec 2021
- 2021Graph-Guided Network for Irregularly Sampled Multivariate Time Series11 Oct 2021
- 2021Time Series Prediction using Deep Learning Methods in Healthcare30 Aug 2021
- 2022Diffusion-based Time Series Imputation and Forecasting with Structured State Space Modelscited by 195
- 2024Deep Time Series Models: A Comprehensive Survey and Benchmarkcited by 191
- 2023A Survey on Graph Neural Networks for Time Series: Forecasting, Classification, Imputation, and Anomaly Detectioncited by 145
- 2021Graph-Guided Network for Irregularly Sampled Multivariate Time Seriescited by 110
- 2021Time Series Prediction using Deep Learning Methods in Healthcarecited by 71
- 2024Deep Learning for Multivariate Time Series Imputation: A Surveycited by 57
- 2024TSI-Bench: Benchmarking Time Series Imputationcited by 33
- 2023Networked Time Series Imputation via Position-aware Graph Enhanced Variational Autoencoderscited by 32
- 2023Deep Imputation of Missing Values in Time Series Health Data: A Review with Benchmarkingcited by 29
- 2023TACTiS-2: Better, Faster, Simpler Attentional Copulas for Multivariate Time Seriescited by 25
- 2022HyperTime: Implicit Neural Representation for Time Seriescited by 24
- 2025Foundation Models for Time Series: A Surveycited by 19
12 most cited of 31 All 31 (JSON)
- 2026MBDiff: Multi-view Behavior-aware Diffusion Model for Probabilistic Utility Data Imputation31 Jul 2026
- 2026Spatiotemporal System Forecasting with Irregular Time Steps via Masked Autoencoder26 Mar 2026
- 2025An Interdisciplinary and Cross-Task Review on Missing Data Imputation3 Nov 2025
- 2025From Samples to Scenarios: A New Paradigm for Probabilistic Forecasting24 Sep 2025
- 2025Foundation Models for Environmental Science: A Survey of Emerging Frontiers5 Apr 2025
- 2025Foundation Models for Time Series: A Survey5 Apr 2025
- 2024Using matrix-product states for time-series machine learning20 Dec 2024
- 2024A Survey and Benchmarking of Spatial-Temporal Traffic Data Imputation Models6 Dec 2024
- 2024Is Precise Recovery Necessary? A Task-Oriented Imputation Approach for Time Series Forecasting on Variable Subset15 Nov 2024
- 2024Early Prediction of Causes (not Effects) in Healthcare by Long-Term Clinical Time Series Forecasting7 Aug 2024
- 2024Deep Time Series Models: A Comprehensive Survey and Benchmark18 Jul 2024
- 2024How Deep is your Guess? A Fresh Perspective on Deep Learning for Medical Time-Series Imputation11 Jul 2024
12 newest of 31 All 31 (JSON)