Explaining Deep Graph Networks with Molecular Counterfactuals
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Abstract (arXiv)
We present a novel approach to tackle explainability of deep graph networks in the context of molecule property prediction tasks, named MEG (Molecular Explanation Generator). We generate informative counterfactual explanations for a specific prediction under the form of (valid) compounds with high structural similarity and different predicted properties. We discuss preliminary results showing how the model can convey non-ML experts with key insights into the learning model focus in the neighborhood of a molecule.
Key facts. Cited by 6 papers in the map (data through 7 Oct 2026). First posted on arXiv 9 Nov 2020.
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Citing papers per year: 2021: 2; 2022: 1; 2023: 0; 2024: 1; 2025: 0; 2026: 2.
6 papers.
- 2021Counterfactual Graphs for Explainable Classification of Brain Networkscited by 33
- 2022A Survey on Graph Counterfactual Explanations: Definitions, Methods, Evaluation, and Research Challengescited by 30
- 2021Counterfactual Explanation with Multi-Agent Reinforcement Learning for Drug Target Predictioncited by 8
- 2024Knowledge Distillation-Based Model Extraction Attack using GAN-based Private Counterfactual Explanationscited by 1
- 2026Fair Recourse for All: Ensuring Individual and Group Fairness in Counterfactual Explanationscited by 1
- 2026Class-Aware Reinforcement Learning for Counterfactual Explanation Generationcited by 0
- 2026Class-Aware Reinforcement Learning for Counterfactual Explanation Generation30 Jul 2026
- 2026Fair Recourse for All: Ensuring Individual and Group Fairness in Counterfactual Explanations28 Jan 2026
- 2024Knowledge Distillation-Based Model Extraction Attack using GAN-based Private Counterfactual Explanations4 Apr 2024
- 2022A Survey on Graph Counterfactual Explanations: Definitions, Methods, Evaluation, and Research Challenges21 Oct 2022
- 2021Counterfactual Graphs for Explainable Classification of Brain Networks16 Jun 2021
- 2021Counterfactual Explanation with Multi-Agent Reinforcement Learning for Drug Target Prediction24 Mar 2021