Topology-Aware Graph Pooling Networks
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Abstract (arXiv)
Pooling operations have shown to be effective on computer vision and natural language processing tasks. One challenge of performing pooling operations on graph data is the lack of locality that is not well-defined on graphs. Previous studies used global ranking methods to sample some of the important nodes, but most of them are not able to incorporate graph topology. In this work, we propose the topology-aware pooling (TAP) layer that explicitly considers graph topology. Our TAP layer is a two-stage voting process that selects more important nodes in a graph. It first performs local voting to generate scores for each node by attending each node to its neighboring nodes. The scores are generated locally such that topology information is explicitly considered. In addition, graph topology is incorporated in global voting to compute the importance score of each node globally in the entire graph. Altogether, the final ranking score for each node is computed by combining its local and global voting scores. To encourage better graph connectivity in the sampled graph, we propose to add a graph connectivity term to the computation of ranking scores. Results on graph classification tasks demonstrate that our methods achieve consistently better performance than previous methods.
Key facts. Cited by 44 papers in the map (data through 7 Oct 2026). First posted on arXiv 19 Oct 2020.
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Citing papers per year: 2021: 9; 2022: 10; 2023: 10; 2024: 10; 2025: 3; 2026: 2.
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- 2021Self-Supervised Learning of Graph Neural Networks: A Unified Reviewcited by 184
- 2021Spherical Message Passing for 3D Graph Networkscited by 166
- 2022GOOD: A Graph Out-of-Distribution Benchmarkcited by 140
- 2022Periodic Graph Transformers for Crystal Material Property Predictioncited by 87
- 2021GraphEBM: Molecular Graph Generation with Energy-Based Modelscited by 85
- 2023A Comprehensive Survey on Deep Graph Representation Learningcited by 72
- 2022ComENet: Towards Complete and Efficient Message Passing for 3D Molecular Graphscited by 69
- 2022Learning Hierarchical Protein Representations via Complete 3D Graph Networkscited by 54
- 2022Graph Pooling for Graph Neural Networks: Progress, Challenges, and Opportunitiescited by 52
- 2023Efficient Approximations of Complete Interatomic Potentials for Crystal Property Predictioncited by 37
- 2022GraphFM: Improving Large-Scale GNN Training via Feature Momentumcited by 31
- 2023Joint Learning of Label and Environment Causal Independence for Graph Out-of-Distribution Generalizationcited by 29
32 more
- 2021Hierarchical Prototype Networks for Continual Graph Representation Learningcited by 28
- 2023Graph Neural Network-based EEG Classification: A Surveycited by 21
- 2024Graph Domain Adaptation with Dual-branch Encoder and Two-level Alignment for Whole Slide Image-based Survival Predictioncited by 20
- 2021Distribution Knowledge Embedding for Graph Poolingcited by 19
- 2022Comprehensive Graph Gradual Pruning for Sparse Training in Graph Neural Networkscited by 18
- 2023Continual Graph Learning: A Surveycited by 17
- 2023Dynamic Graph Representation Learning with Neural Networks: A Surveycited by 15
- 2021Hierarchical Adaptive Pooling by Capturing High-order Dependency for Graph Representation Learningcited by 14
- 2024GALA: Graph Diffusion-based Alignment with Jigsaw for Source-free Domain Adaptationcited by 8
- 2022Generalizing Downsampling from Regular Data to Graphscited by 6
- 2024Clustering for Protein Representation Learningcited by 6
- 2021Node2Seq: Towards Trainable Convolutions in Graph Neural Networkscited by 5
- 2024GEFL: Extended Filtration Learning for Graph Classificationcited by 5
- 2024MaxCutPool: differentiable feature-aware Maxcut for pooling in graph neural networkscited by 5
- 2023On Exploring Node-feature and Graph-structure Diversities for Node Drop Graph Poolingcited by 4
- 2024NC-NCD: Novel Class Discovery for Node Classificationcited by 4
- 2025RISE: Radius of Influence based Subgraph Extraction for 3D Molecular Graph Explanationcited by 3
- 2021BiGCN: A Bi-directional Low-Pass Filtering Graph Neural Networkcited by 2
- 2024Scalable Graph Compressed Convolutionscited by 2
- 2025BN-Pool: Bayesian Nonparametric Pooling for Graphscited by 2
- 2021Seeing All From a Few: Nodes Selection Using Graph Pooling for Graph Clusteringcited by 1
- 2022Dynamic Molecular Graph-based Implementation for Biophysical Properties Predictioncited by 1
- 2023Careful Selection and Thoughtful Discarding: Graph Explicit Pooling Utilizing Discarded Nodescited by 1
- 2023A Novel Normalized-Cut Solver with Nearest Neighbor Hierarchical Initializationcited by 1
- 2023PerCNet: Periodic Complete Representation for Crystal Graphscited by 1
- 2024ADA-GNN: Atom-Distance-Angle Graph Neural Network for Crystal Material Property Predictioncited by 1
- 2024Advancing Graph Neural Networks with HL-HGAT: A Hodge-Laplacian and Attention Mechanism Approach for Heterogeneous Graph-Structured Datacited by 1
- 2024Edge-Based Graph Component Poolingcited by 1
- 2022Hierarchical Graph Pooling is an Effective Citywide Traffic Condition Prediction Modelcited by 0
- 2025Feature Preserving Shrinkage on Bayesian Neural Networks via the R2D2 Priorcited by 0
- 2026Learning from Historical Activations in Graph Neural Networkscited by 0
- 2026SNI-GNN: SmartNIC-Assisted Full-Graph GNN Training with In-Network Embedding Predictioncited by 0
- 2026SNI-GNN: SmartNIC-Assisted Full-Graph GNN Training with In-Network Embedding Prediction6 Aug 2026
- 2026Learning from Historical Activations in Graph Neural Networks3 Jan 2026
- 2025Feature Preserving Shrinkage on Bayesian Neural Networks via the R2D2 Prior23 May 2025
- 2025RISE: Radius of Influence based Subgraph Extraction for 3D Molecular Graph Explanation4 May 2025
- 2025BN-Pool: Bayesian Nonparametric Pooling for Graphs16 Jan 2025
- 2024Graph Domain Adaptation with Dual-branch Encoder and Two-level Alignment for Whole Slide Image-based Survival Prediction21 Nov 2024
- 2024GALA: Graph Diffusion-based Alignment with Jigsaw for Source-free Domain Adaptation22 Oct 2024
- 2024Edge-Based Graph Component Pooling18 Sep 2024
- 2024MaxCutPool: differentiable feature-aware Maxcut for pooling in graph neural networks8 Sep 2024
- 2024Scalable Graph Compressed Convolutions26 Jul 2024
- 2024NC-NCD: Novel Class Discovery for Node Classification25 Jul 2024
- 2024GEFL: Extended Filtration Learning for Graph Classification4 Jun 2024
32 more
- 2024Clustering for Protein Representation Learning30 Mar 2024
- 2024Advancing Graph Neural Networks with HL-HGAT: A Hodge-Laplacian and Attention Mechanism Approach for Heterogeneous Graph-Structured Data11 Mar 2024
- 2024ADA-GNN: Atom-Distance-Angle Graph Neural Network for Crystal Material Property Prediction22 Jan 2024
- 2023PerCNet: Periodic Complete Representation for Crystal Graphs3 Dec 2023
- 2023A Novel Normalized-Cut Solver with Nearest Neighbor Hierarchical Initialization26 Nov 2023
- 2023Careful Selection and Thoughtful Discarding: Graph Explicit Pooling Utilizing Discarded Nodes21 Nov 2023
- 2023Graph Neural Network-based EEG Classification: A Survey3 Oct 2023
- 2023On Exploring Node-feature and Graph-structure Diversities for Node Drop Graph Pooling22 Jun 2023
- 2023Efficient Approximations of Complete Interatomic Potentials for Crystal Property Prediction12 Jun 2023
- 2023Joint Learning of Label and Environment Causal Independence for Graph Out-of-Distribution Generalization1 Jun 2023
- 2023Dynamic Graph Representation Learning with Neural Networks: A Survey12 Apr 2023
- 2023A Comprehensive Survey on Deep Graph Representation Learning11 Apr 2023
- 2023Continual Graph Learning: A Survey28 Jan 2023
- 2022Dynamic Molecular Graph-based Implementation for Biophysical Properties Prediction20 Dec 2022
- 2022Periodic Graph Transformers for Crystal Material Property Prediction23 Sep 2022
- 2022Hierarchical Graph Pooling is an Effective Citywide Traffic Condition Prediction Model8 Sep 2022
- 2022Generalizing Downsampling from Regular Data to Graphs6 Aug 2022
- 2022Learning Hierarchical Protein Representations via Complete 3D Graph Networks26 Jul 2022
- 2022Comprehensive Graph Gradual Pruning for Sparse Training in Graph Neural Networks18 Jul 2022
- 2022ComENet: Towards Complete and Efficient Message Passing for 3D Molecular Graphs17 Jun 2022
- 2022GOOD: A Graph Out-of-Distribution Benchmark16 Jun 2022
- 2022GraphFM: Improving Large-Scale GNN Training via Feature Momentum14 Jun 2022
- 2022Graph Pooling for Graph Neural Networks: Progress, Challenges, and Opportunities15 Apr 2022
- 2021Hierarchical Prototype Networks for Continual Graph Representation Learning30 Nov 2021
- 2021Distribution Knowledge Embedding for Graph Pooling29 Sep 2021
- 2021Seeing All From a Few: Nodes Selection Using Graph Pooling for Graph Clustering30 Apr 2021
- 2021Hierarchical Adaptive Pooling by Capturing High-order Dependency for Graph Representation Learning13 Apr 2021
- 2021Self-Supervised Learning of Graph Neural Networks: A Unified Review22 Feb 2021
- 2021Spherical Message Passing for 3D Graph Networks9 Feb 2021
- 2021GraphEBM: Molecular Graph Generation with Energy-Based Models31 Jan 2021
- 2021BiGCN: A Bi-directional Low-Pass Filtering Graph Neural Network14 Jan 2021
- 2021Node2Seq: Towards Trainable Convolutions in Graph Neural Networks6 Jan 2021
- 2021Self-Supervised Learning of Graph Neural Networks: A Unified Reviewcited by 184
- 2021Spherical Message Passing for 3D Graph Networkscited by 166
- 2022GOOD: A Graph Out-of-Distribution Benchmarkcited by 140
- 2022Periodic Graph Transformers for Crystal Material Property Predictioncited by 87
- 2021GraphEBM: Molecular Graph Generation with Energy-Based Modelscited by 85
- 2023A Comprehensive Survey on Deep Graph Representation Learningcited by 72
- 2022ComENet: Towards Complete and Efficient Message Passing for 3D Molecular Graphscited by 69
- 2022Learning Hierarchical Protein Representations via Complete 3D Graph Networkscited by 54
- 2022Graph Pooling for Graph Neural Networks: Progress, Challenges, and Opportunitiescited by 52
- 2023Efficient Approximations of Complete Interatomic Potentials for Crystal Property Predictioncited by 37
- 2022GraphFM: Improving Large-Scale GNN Training via Feature Momentumcited by 31
- 2023Joint Learning of Label and Environment Causal Independence for Graph Out-of-Distribution Generalizationcited by 29
12 most cited of 43 All 43 (JSON)
- 2026SNI-GNN: SmartNIC-Assisted Full-Graph GNN Training with In-Network Embedding Prediction6 Aug 2026
- 2026Learning from Historical Activations in Graph Neural Networks3 Jan 2026
- 2025Feature Preserving Shrinkage on Bayesian Neural Networks via the R2D2 Prior23 May 2025
- 2025RISE: Radius of Influence based Subgraph Extraction for 3D Molecular Graph Explanation4 May 2025
- 2025BN-Pool: Bayesian Nonparametric Pooling for Graphs16 Jan 2025
- 2024Graph Domain Adaptation with Dual-branch Encoder and Two-level Alignment for Whole Slide Image-based Survival Prediction21 Nov 2024
- 2024Edge-Based Graph Component Pooling18 Sep 2024
- 2024MaxCutPool: differentiable feature-aware Maxcut for pooling in graph neural networks8 Sep 2024
- 2024Scalable Graph Compressed Convolutions26 Jul 2024
- 2024NC-NCD: Novel Class Discovery for Node Classification25 Jul 2024
- 2024GEFL: Extended Filtration Learning for Graph Classification4 Jun 2024
- 2024Clustering for Protein Representation Learning30 Mar 2024
12 newest of 43 All 43 (JSON)