HyperSAGE: Generalizing Inductive Representation Learning on Hypergraphs
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Abstract (arXiv)
Graphs are the most ubiquitous form of structured data representation used in machine learning. They model, however, only pairwise relations between nodes and are not designed for encoding the higher-order relations found in many real-world datasets. To model such complex relations, hypergraphs have proven to be a natural representation. Learning the node representations in a hypergraph is more complex than in a graph as it involves information propagation at two levels: within every hyperedge and across the hyperedges. Most current approaches first transform a hypergraph structure to a graph for use in existing geometric deep learning algorithms. This transformation leads to information loss, and sub-optimal exploitation of the hypergraph's expressive power. We present HyperSAGE, a novel hypergraph learning framework that uses a two-level neural message passing strategy to accurately and efficiently propagate information through hypergraphs. The flexible design of HyperSAGE facilitates different ways of aggregating neighborhood information. Unlike the majority of related work which is transductive, our approach, inspired by the popular GraphSAGE method, is inductive. Thus, it can also be used on previously unseen nodes, facilitating deployment in problems such as evolving or partially observed hypergraphs. Through extensive experimentation, we show that HyperSAGE outperforms state-of-the-art hypergraph learning methods on representative benchmark datasets. We also demonstrate that the higher expressive power of HyperSAGE makes it more stable in learning node representations as compared to the alternatives.
Key facts. Cited by 53 papers in the map (data through 7 Oct 2026). First posted on arXiv 9 Oct 2020.
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Citing papers per year: 2021: 5; 2022: 12; 2023: 10; 2024: 9; 2025: 9; 2026: 8.
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- 2021UniGNN: a Unified Framework for Graph and Hypergraph Neural Networkscited by 127
- 2021You are AllSet: A Multiset Function Framework for Hypergraph Neural Networkscited by 124
- 2021Signal Processing on Higher-Order Networks: Livin' on the Edge ... and Beyondcited by 81
- 2022Equivariant Hypergraph Diffusion Neural Operatorscited by 45
- 2023Architectures of Topological Deep Learning: A Survey of Message-Passing Topological Neural Networkscited by 43
- 2023HYTREL: Hypergraph-enhanced Tabular Data Representation Learningcited by 35
- 2023Sheaf Hypergraph Networkscited by 33
- 2022Augmentations in Hypergraph Contrastive Learning: Fabricated and Generativecited by 28
- 2022I'm Me, We're Us, and I'm Us: Tri-directional Contrastive Learning on Hypergraphscited by 20
- 2023From Hypergraph Energy Functions to Hypergraph Neural Networkscited by 17
- 2022Hypergraph Convolutional Networks via Equivalency between Hypergraphs and Undirected Graphscited by 15
- 2022Equivariant Hypergraph Neural Networkscited by 14
38 more
- 2022HEAT: Hyperedge Attention Networkscited by 13
- 2023Hypergraph Neural Networks through the Lens of Message Passing: A Common Perspective to Homophily and Architecture Designcited by 13
- 2023Joint Entity and Relation Extraction with Span Pruning and Hypergraph Neural Networkscited by 11
- 2021Adaptive Neural Message Passing for Inductive Learning on Hypergraphscited by 10
- 2022A Survey on Hyperlink Predictioncited by 9
- 2022A Hypergraph Neural Network Framework for Learning Hyperedge-Dependent Node Embeddingscited by 9
- 2021Principled Hyperedge Prediction with Structural Spectral Features and Neural Networkscited by 7
- 2022Deep Hypergraph Structure Learningcited by 7
- 2023ICML 2023 Topological Deep Learning Challenge : Design and Resultscited by 7
- 2025Recent Advances in Hypergraph Neural Networkscited by 7
- 2023CAT-Walk: Inductive Hypergraph Learning via Set Walkscited by 6
- 2025DVHGNN: Multi-Scale Dilated Vision HGNN for Efficient Vision Recognitioncited by 6
- 2025Hypergraph Foundation Modelcited by 5
- 2024Ada-HGNN: Adaptive Sampling for Scalable Hypergraph Neural Networkscited by 4
- 2024Demystifying Higher-Order Graph Neural Networkscited by 4
- 2024Hypergraph Multi-modal Large Language Model: Exploiting EEG and Eye-tracking Modalities to Evaluate Heterogeneous Responses for Video Understandingcited by 4
- 2025HyperGCL: Multi-Modal Graph Contrastive Learning via Learnable Hypergraph Viewscited by 4
- 2023CHGNN: A Semi-Supervised Contrastive Hypergraph Learning Networkcited by 3
- 2024DPHGNN: A Dual Perspective Hypergraph Neural Networkscited by 3
- 2022A Simple Hypergraph Kernel Convolution based on Discounted Markov Diffusion Processcited by 2
- 2023Hypergraph Node Representation Learning with One-Stage Message Passingcited by 2
- 2024Expressive Higher-Order Link Prediction through Hypergraph Symmetry Breakingcited by 2
- 2024Modeling Edge-Specific Node Features through Co-Representation Neural Hypergraph Diffusioncited by 2
- 2024Hyperbolic Hypergraph Neural Networks for Multi-Relational Knowledge Hypergraph Representationcited by 2
- 2025Self-Explaining Hypergraph Neural Networks for Diagnosis Predictioncited by 2
- 2025Root Cause Analysis for Microservice Systems via Cascaded Conditional Learning with Hypergraphscited by 2
- 2026Tackling Over-smoothing on Hypergraphs: A Ricci Flow-guided Neural Diffusion Approachcited by 2
- 2026Hypergraph Neural Diffusion: A PDE-Inspired Framework for Hypergraph Message Passingcited by 2
- 2022Evaluating Distribution System Reliability with Hyperstructures Graph Convolutional Netscited by 0
- 2022Supervised Hypergraph Reconstructioncited by 0
- 2024Hyperedge Interaction-aware Hypergraph Neural Networkcited by 0
- 2024Federated Hypergraph Learning with Local Differential Privacy: Toward Privacy-Aware Hypergraph Structure Completioncited by 0
- 2025Overlap-aware meta-learning attention to enhance hypergraph neural networks for node classificationcited by 0
- 2025HyperKAN: Hypergraph Representation Learning with Kolmogorov-Arnold Networkscited by 0
- 2025Higher-Order Graph Databasescited by 0
- 2026HyperPotter: Spell the Charm of High-Order Interactions in Audio Deepfake Detectioncited by 0
- 2026From Representation to Clusters: A Contrastive Learning Approach for Attributed Hypergraph Clusteringcited by 0
- 2026Hypergraph Neural Networks Accelerate MUS Enumerationcited by 0
50 most cited of 53 All 53 (JSON)
- 2026AutoHGNN: Robust and Efficient Neural Architecture Search for Hypergraph Neural Networks27 Sep 2026
- 2026The WidthWall: A Strict Expressivity Hierarchy for Hypergraph Neural Networks13 May 2026
- 2026TopoU-Net: a U-Net architecture for topological domains11 May 2026
- 2026Hypergraph Neural Diffusion: A PDE-Inspired Framework for Hypergraph Message Passing13 Apr 2026
- 2026Hypergraph Neural Networks Accelerate MUS Enumeration10 Apr 2026
- 2026Tackling Over-smoothing on Hypergraphs: A Ricci Flow-guided Neural Diffusion Approach16 Mar 2026
- 2026From Representation to Clusters: A Contrastive Learning Approach for Attributed Hypergraph Clustering10 Mar 2026
- 2026HyperPotter: Spell the Charm of High-Order Interactions in Audio Deepfake Detection5 Feb 2026
- 2025Root Cause Analysis for Microservice Systems via Cascaded Conditional Learning with Hypergraphs14 Nov 2025
- 2025Higher-Order Graph Databases24 Jun 2025
- 2025DVHGNN: Multi-Scale Dilated Vision HGNN for Efficient Vision Recognition19 Mar 2025
- 2025HyperKAN: Hypergraph Representation Learning with Kolmogorov-Arnold Networks16 Mar 2025
38 more
- 2025Overlap-aware meta-learning attention to enhance hypergraph neural networks for node classification11 Mar 2025
- 2025Recent Advances in Hypergraph Neural Networks11 Mar 2025
- 2025Hypergraph Foundation Model3 Mar 2025
- 2025HyperGCL: Multi-Modal Graph Contrastive Learning via Learnable Hypergraph Views18 Feb 2025
- 2025Self-Explaining Hypergraph Neural Networks for Diagnosis Prediction15 Feb 2025
- 2024Hyperbolic Hypergraph Neural Networks for Multi-Relational Knowledge Hypergraph Representation11 Dec 2024
- 2024Federated Hypergraph Learning with Local Differential Privacy: Toward Privacy-Aware Hypergraph Structure Completion9 Aug 2024
- 2024Hypergraph Multi-modal Large Language Model: Exploiting EEG and Eye-tracking Modalities to Evaluate Heterogeneous Responses for Video Understanding11 Jul 2024
- 2024Demystifying Higher-Order Graph Neural Networks18 Jun 2024
- 2024DPHGNN: A Dual Perspective Hypergraph Neural Networks26 May 2024
- 2024Modeling Edge-Specific Node Features through Co-Representation Neural Hypergraph Diffusion23 May 2024
- 2024Ada-HGNN: Adaptive Sampling for Scalable Hypergraph Neural Networks22 May 2024
- 2024Expressive Higher-Order Link Prediction through Hypergraph Symmetry Breaking17 Feb 2024
- 2024Hyperedge Interaction-aware Hypergraph Neural Network28 Jan 2024
- 2023Hypergraph Node Representation Learning with One-Stage Message Passing1 Dec 2023
- 2023Joint Entity and Relation Extraction with Span Pruning and Hypergraph Neural Networks26 Oct 2023
- 2023Hypergraph Neural Networks through the Lens of Message Passing: A Common Perspective to Homophily and Architecture Design11 Oct 2023
- 2023Sheaf Hypergraph Networks29 Sep 2023
- 2023ICML 2023 Topological Deep Learning Challenge : Design and Results26 Sep 2023
- 2023HYTREL: Hypergraph-enhanced Tabular Data Representation Learning14 Jul 2023
- 2023CAT-Walk: Inductive Hypergraph Learning via Set Walks19 Jun 2023
- 2023From Hypergraph Energy Functions to Hypergraph Neural Networks16 Jun 2023
- 2023Architectures of Topological Deep Learning: A Survey of Message-Passing Topological Neural Networks20 Apr 2023
- 2023CHGNN: A Semi-Supervised Contrastive Hypergraph Learning Network10 Mar 2023
- 2022A Hypergraph Neural Network Framework for Learning Hyperedge-Dependent Node Embeddings28 Dec 2022
- 2022Supervised Hypergraph Reconstruction23 Nov 2022
- 2022Evaluating Distribution System Reliability with Hyperstructures Graph Convolutional Nets14 Nov 2022
- 2022A Simple Hypergraph Kernel Convolution based on Discounted Markov Diffusion Process30 Oct 2022
- 2022Augmentations in Hypergraph Contrastive Learning: Fabricated and Generative7 Oct 2022
- 2022Deep Hypergraph Structure Learning26 Aug 2022
- 2022Equivariant Hypergraph Neural Networks22 Aug 2022
- 2022Equivariant Hypergraph Diffusion Neural Operators14 Jul 2022
- 2022A Survey on Hyperlink Prediction6 Jul 2022
- 2022I'm Me, We're Us, and I'm Us: Tri-directional Contrastive Learning on Hypergraphs9 Jun 2022
- 2022Hypergraph Convolutional Networks via Equivalency between Hypergraphs and Undirected Graphs31 Mar 2022
- 2022HEAT: Hyperedge Attention Networks28 Jan 2022
- 2021Adaptive Neural Message Passing for Inductive Learning on Hypergraphs22 Sep 2021
- 2021You are AllSet: A Multiset Function Framework for Hypergraph Neural Networks24 Jun 2021
50 newest of 53 All 53 (JSON)
- 2021UniGNN: a Unified Framework for Graph and Hypergraph Neural Networkscited by 127
- 2021You are AllSet: A Multiset Function Framework for Hypergraph Neural Networkscited by 124
- 2021Signal Processing on Higher-Order Networks: Livin' on the Edge ... and Beyondcited by 81
- 2022Equivariant Hypergraph Diffusion Neural Operatorscited by 45
- 2023Architectures of Topological Deep Learning: A Survey of Message-Passing Topological Neural Networkscited by 43
- 2023HYTREL: Hypergraph-enhanced Tabular Data Representation Learningcited by 35
- 2023Sheaf Hypergraph Networkscited by 33
- 2022Augmentations in Hypergraph Contrastive Learning: Fabricated and Generativecited by 28
- 2022I'm Me, We're Us, and I'm Us: Tri-directional Contrastive Learning on Hypergraphscited by 20
- 2023From Hypergraph Energy Functions to Hypergraph Neural Networkscited by 17
- 2022Hypergraph Convolutional Networks via Equivalency between Hypergraphs and Undirected Graphscited by 15
- 2022Equivariant Hypergraph Neural Networkscited by 14
12 most cited of 52 All 52 (JSON)
- 2026AutoHGNN: Robust and Efficient Neural Architecture Search for Hypergraph Neural Networks27 Sep 2026
- 2026The WidthWall: A Strict Expressivity Hierarchy for Hypergraph Neural Networks13 May 2026
- 2026TopoU-Net: a U-Net architecture for topological domains11 May 2026
- 2026Hypergraph Neural Diffusion: A PDE-Inspired Framework for Hypergraph Message Passing13 Apr 2026
- 2026Hypergraph Neural Networks Accelerate MUS Enumeration10 Apr 2026
- 2026Tackling Over-smoothing on Hypergraphs: A Ricci Flow-guided Neural Diffusion Approach16 Mar 2026
- 2026From Representation to Clusters: A Contrastive Learning Approach for Attributed Hypergraph Clustering10 Mar 2026
- 2026HyperPotter: Spell the Charm of High-Order Interactions in Audio Deepfake Detection5 Feb 2026
- 2025Root Cause Analysis for Microservice Systems via Cascaded Conditional Learning with Hypergraphs14 Nov 2025
- 2025Higher-Order Graph Databases24 Jun 2025
- 2025DVHGNN: Multi-Scale Dilated Vision HGNN for Efficient Vision Recognition19 Mar 2025
- 2025HyperKAN: Hypergraph Representation Learning with Kolmogorov-Arnold Networks16 Mar 2025
12 newest of 52 All 52 (JSON)