PANE: scalable and effective attributed network embedding
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Abstract (arXiv)
Given a graph G where each node is associated with a set of attributes, attributed network embedding (ANE) maps each node v in G to a compact vector Xv, which can be used in downstream machine learning tasks. Ideally, Xv should capture node v's affinity to each attribute, which considers not only v's own attribute associations, but also those of its connected nodes along edges in G. It is challenging to obtain high-utility embeddings that enable accurate predictions; scaling effective ANE computation to massive graphs pushes the difficulty of the problem to a whole new level. Existing solutions largely fail on such graphs, leading to prohibitive costs, low-quality embeddings, or both. This paper proposes PANE, an effective and scalable approach to ANE computation for massive graphs that achieves state-of-the-art result quality on multiple benchmark datasets. PANE obtains high scalability and effectiveness through 3 main algorithmic designs. First, it formulates the learning objective based on a novel random walk model for attributed networks. Second, PANE includes a highly efficient solver for the above optimization problem, whose key module is a carefully designed initialization of the embeddings, which drastically reduces the number of iterations required to converge. Finally, PANE utilizes multi-core CPUs through non-trivial parallelization of the above solver, which achieves scalability while retaining the high quality of the resulting embeddings. The performance of PANE depends upon the number of attributes in the input network. To handle large networks with numerous attributes, we further extend PANE to PANE++. Extensive experiments, comparing 10 existing approaches on 8 real datasets, demonstrate that PANE and PANE++ consistently outperform all existing methods in terms of result quality, while being orders of magnitude faster.
Key facts. Cited by 23 papers in the map (data through 7 Oct 2026). First posted on arXiv 2 Sep 2020.
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Citing papers per year: 2023: 1; 2024: 7; 2025: 9; 2026: 6.
23 papers.
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- 2024Fully-inductive Node Classification on Arbitrary Graphscited by 36
- 2025Equivariance Everywhere All At Once: A Recipe for Graph Foundation Modelscited by 17
- 2025Bringing Graphs to the Table: Zero-shot Node Classification via Tabular Foundation Modelscited by 12
- 2024Verifying message-passing neural networks via topology-based bounds tighteningcited by 10
- 2024On the Impact of Feature Heterophily on Link Prediction with Graph Neural Networkscited by 10
- 2024What Is Missing In Homophily? Disentangling Graph Homophily For Graph Neural Networkscited by 9
- 2024Effective Clustering on Large Attributed Bipartite Graphscited by 7
- 2024Spectral Subspace Clustering for Attributed Graphscited by 6
- 2025Towards Efficient Training of Graph Neural Networks: A Multiscale Approachcited by 4
- 2025View Space: Learning Representation across Arbitrary Graphscited by 4
- 2025How Low Can You Go? Searching for the Intrinsic Dimensionality of Complex Networks using Metric Node Embeddingscited by 3
- 2024DiGRAF: Diffeomorphic Graph-Adaptive Activation Functioncited by 2
11 more
- 2025Adaptive Local Clustering over Attributed Graphscited by 2
- 2025Effective Clustering for Large Multi-Relational Graphscited by 2
- 2025GILT: An LLM-Free, Tuning-Free Graph Foundational Model for In-Context Learningcited by 2
- 2026Modality-free Graph In-context Alignmentcited by 2
- 2023PGB: A PubMed Graph Benchmark for Heterogeneous Network Representation Learningcited by 1
- 2025Robustness Verification of Graph Neural Networks Via Lightweight Satisfiability Testingcited by 0
- 2026SPGCL: Simple yet Powerful Graph Contrastive Learning via SVD-Guided Structural Perturbationcited by 0
- 2026Community Concealment from Graph Neural Networkscited by 0
- 2026Can Graph Foundation Models Generalize Over Architecture?cited by 0
- 2026The Impact of Dimensionality on the Stability of Node Embeddingscited by 0
- 2026Neural Message Passing on Structural Interaction Graphs for Fully-Inductive Graph Neural Networkscited by 0
- 2026Neural Message Passing on Structural Interaction Graphs for Fully-Inductive Graph Neural Networks9 Aug 2026
- 2026The Impact of Dimensionality on the Stability of Node Embeddings9 Apr 2026
- 2026Can Graph Foundation Models Generalize Over Architecture?24 Mar 2026
- 2026Modality-free Graph In-context Alignment13 Mar 2026
- 2026Community Concealment from Graph Neural Networks12 Feb 2026
- 2026SPGCL: Simple yet Powerful Graph Contrastive Learning via SVD-Guided Structural Perturbation20 Jan 2026
- 2025View Space: Learning Representation across Arbitrary Graphs12 Dec 2025
- 2025Robustness Verification of Graph Neural Networks Via Lightweight Satisfiability Testing21 Oct 2025
- 2025GILT: An LLM-Free, Tuning-Free Graph Foundational Model for In-Context Learning6 Oct 2025
- 2025Bringing Graphs to the Table: Zero-shot Node Classification via Tabular Foundation Models8 Sep 2025
- 2025Effective Clustering for Large Multi-Relational Graphs24 Aug 2025
- 2025Equivariance Everywhere All At Once: A Recipe for Graph Foundation Models17 Jun 2025
11 more
- 2025Adaptive Local Clustering over Attributed Graphs26 Mar 2025
- 2025Towards Efficient Training of Graph Neural Networks: A Multiscale Approach25 Mar 2025
- 2025How Low Can You Go? Searching for the Intrinsic Dimensionality of Complex Networks using Metric Node Embeddings3 Mar 2025
- 2024Spectral Subspace Clustering for Attributed Graphs17 Nov 2024
- 2024On the Impact of Feature Heterophily on Link Prediction with Graph Neural Networks26 Sep 2024
- 2024DiGRAF: Diffeomorphic Graph-Adaptive Activation Function2 Jul 2024
- 2024What Is Missing In Homophily? Disentangling Graph Homophily For Graph Neural Networks27 Jun 2024
- 2024Fully-inductive Node Classification on Arbitrary Graphs30 May 2024
- 2024Effective Clustering on Large Attributed Bipartite Graphs20 May 2024
- 2024Verifying message-passing neural networks via topology-based bounds tightening21 Feb 2024
- 2023PGB: A PubMed Graph Benchmark for Heterogeneous Network Representation Learning4 May 2023
- 2024Fully-inductive Node Classification on Arbitrary Graphscited by 36
- 2025Equivariance Everywhere All At Once: A Recipe for Graph Foundation Modelscited by 17
- 2025Bringing Graphs to the Table: Zero-shot Node Classification via Tabular Foundation Modelscited by 12
- 2024Verifying message-passing neural networks via topology-based bounds tighteningcited by 10
- 2024On the Impact of Feature Heterophily on Link Prediction with Graph Neural Networkscited by 10
- 2024What Is Missing In Homophily? Disentangling Graph Homophily For Graph Neural Networkscited by 9
- 2024Effective Clustering on Large Attributed Bipartite Graphscited by 7
- 2024Spectral Subspace Clustering for Attributed Graphscited by 6
- 2025Towards Efficient Training of Graph Neural Networks: A Multiscale Approachcited by 4
- 2025View Space: Learning Representation across Arbitrary Graphscited by 4
- 2025How Low Can You Go? Searching for the Intrinsic Dimensionality of Complex Networks using Metric Node Embeddingscited by 3
- 2024DiGRAF: Diffeomorphic Graph-Adaptive Activation Functioncited by 2
12 most cited of 23 All 23 (JSON)
- 2026Neural Message Passing on Structural Interaction Graphs for Fully-Inductive Graph Neural Networks9 Aug 2026
- 2026The Impact of Dimensionality on the Stability of Node Embeddings9 Apr 2026
- 2026Can Graph Foundation Models Generalize Over Architecture?24 Mar 2026
- 2026Modality-free Graph In-context Alignment13 Mar 2026
- 2026Community Concealment from Graph Neural Networks12 Feb 2026
- 2026SPGCL: Simple yet Powerful Graph Contrastive Learning via SVD-Guided Structural Perturbation20 Jan 2026
- 2025View Space: Learning Representation across Arbitrary Graphs12 Dec 2025
- 2025Robustness Verification of Graph Neural Networks Via Lightweight Satisfiability Testing21 Oct 2025
- 2025GILT: An LLM-Free, Tuning-Free Graph Foundational Model for In-Context Learning6 Oct 2025
- 2025Bringing Graphs to the Table: Zero-shot Node Classification via Tabular Foundation Models8 Sep 2025
- 2025Effective Clustering for Large Multi-Relational Graphs24 Aug 2025
- 2025Equivariance Everywhere All At Once: A Recipe for Graph Foundation Models17 Jun 2025
12 newest of 23 All 23 (JSON)