Self-Loop Uncertainty: A Novel Pseudo-Label for Semi-Supervised Medical Image Segmentation
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Abstract (arXiv)
Witnessing the success of deep learning neural networks in natural image processing, an increasing number of studies have been proposed to develop deep-learning-based frameworks for medical image segmentation. However, since the pixel-wise annotation of medical images is laborious and expensive, the amount of annotated data is usually deficient to well-train a neural network. In this paper, we propose a semi-supervised approach to train neural networks with limited labeled data and a large quantity of unlabeled images for medical image segmentation. A novel pseudo-label (namely self-loop uncertainty), generated by recurrently optimizing the neural network with a self-supervised task, is adopted as the ground-truth for the unlabeled images to augment the training set and boost the segmentation accuracy. The proposed self-loop uncertainty can be seen as an approximation of the uncertainty estimation yielded by ensembling multiple models with a significant reduction of inference time. Experimental results on two publicly available datasets demonstrate the effectiveness of our semi-supervied approach.
Key facts. Cited by 42 papers in the map (data through 7 Oct 2026). First posted on arXiv 20 Jul 2020.
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Citing papers per year: 2021: 6; 2022: 10; 2023: 10; 2024: 7; 2025: 6; 2026: 3.
42 papers.
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- 2021Self-supervised learning methods and applications in medical imaging analysis: A surveycited by 76
- 2021Multi-Layer Pseudo-Supervision for Histopathology Tissue Semantic Segmentation using Patch-level Classification Labelscited by 43
- 2021Semi-supervised Meta-learning with Disentanglement for Domain-generalised Medical Image Segmentationcited by 36
- 2022Estimating Egocentric 3D Human Pose in the Wild with External Weak Supervisioncited by 33
- 2022WSSS4LUAD: Grand Challenge on Weakly-supervised Tissue Semantic Segmentation for Lung Adenocarcinomacited by 32
- 2021Medical Image Segmentation with Limited Supervision: A Review of Deep Network Modelscited by 21
- 2022Which Pixel to Annotate: a Label-Efficient Nuclei Segmentation Frameworkcited by 14
- 2023Label-Efficient Deep Learning in Medical Image Analysis: Challenges and Future Directionscited by 14
- 2021Exploring Feature Representation Learning for Semi-supervised Medical Image Segmentationcited by 11
- 2023A Review of Predictive and Contrastive Self-supervised Learning for Medical Imagescited by 10
- 2024FPL+: Filtered Pseudo Label-based Unsupervised Cross-Modality Adaptation for 3D Medical Image Segmentationcited by 10
- 2022Adversarial Dual-Student with Differentiable Spatial Warping for Semi-Supervised Semantic Segmentationcited by 9
30 more
- 2025DyCON: Dynamic Uncertainty-aware Consistency and Contrastive Learning for Semi-supervised Medical Image Segmentationcited by 8
- 2023Self-Supervised Correction Learning for Semi-Supervised Biomedical Image Segmentationcited by 7
- 2023Fine-Grained Self-Supervised Learning with Jigsaw Puzzles for Medical Image Classificationcited by 7
- 2021Uncertainty-Aware Semi-Supervised Few Shot Segmentationcited by 5
- 2022Bayesian Pseudo Labels: Expectation Maximization for Robust and Efficient Semi-Supervised Segmentationcited by 5
- 2022Did You Get What You Paid For? Rethinking Annotation Cost of Deep Learning Based Computer Aided Detection in Chest Radiographscited by 5
- 2023NP-SemiSeg: When Neural Processes meet Semi-Supervised Semantic Segmentationcited by 5
- 2024An Evidential-enhanced Tri-Branch Consistency Learning Method for Semi-supervised Medical Image Segmentationcited by 5
- 2023Active Learning in Brain Tumor Segmentation with Uncertainty Sampling, Annotation Redundancy Restriction, and Data Initializationcited by 4
- 2022Teachers in concordance for pseudo-labeling of 3D sequential datacited by 3
- 2024Few-Shot Learning for Annotation-Efficient Nucleus Instance Segmentationcited by 3
- 2024Inter- and intra-uncertainty based feature aggregation model for semi-supervised histopathology image segmentationcited by 3
- 2025Balancing Multi-Target Semi-Supervised Medical Image Segmentation with Collaborative Generalist and Specialistscited by 3
- 2022Deep learning based domain adaptation for mitochondria segmentation on EM volumescited by 2
- 2022On the pitfalls of entropy-based uncertainty for multi-class semi-supervised segmentationcited by 2
- 2023Expectation Maximization Pseudo Labelscited by 2
- 2024Synergy-Guided Regional Supervision of Pseudo Labels for Semi-Supervised Medical Image Segmentationcited by 2
- 2023Semi-Supervised Medical Image Segmentation with Co-Distribution Alignmentcited by 1
- 2025ERANet: Edge Replacement Augmentation for Semi-Supervised Meniscus Segmentation with Prototype Consistency Alignment and Conditional Self-Trainingcited by 1
- 2025A Comprehensive Study on Medical Image Segmentation using Deep Neural Networkscited by 1
- 2025Dual-supervised Asymmetric Co-training for Semi-supervised Medical Domain Generalizationcited by 1
- 2026Learning Label-Efficient Interpretable Medical Image Diagnosis via Semi-supervised Hypergraph Concept Bottleneck Modelcited by 1
- 2022Mutual- and Self- Prototype Alignment for Semi-supervised Medical Image Segmentationcited by 0
- 2023Clinically Acceptable Segmentation of Organs at Risk in Cervical Cancer Radiation Treatment from Clinically Available Annotationscited by 0
- 2023Interpretability-guided Data Augmentation for Robust Segmentation in Multi-centre Colonoscopy Datacited by 0
- 2024Self and Mixed Supervision to Improve Training Labels for Multi-Class Medical Image Segmentationcited by 0
- 2024Enhancing 3D Transformer Segmentation Model for Medical Image with Token-level Representation Learningcited by 0
- 2025Co-Evidential Fusion with Information Volume for Medical Image Segmentationcited by 0
- 2026Gradient based Severity Labeling for Biomarker Classification in OCTcited by 0
- 2026Semantic Class Distribution Learning for Debiasing Semi-Supervised Medical Image Segmentationcited by 0
- 2026Learning Label-Efficient Interpretable Medical Image Diagnosis via Semi-supervised Hypergraph Concept Bottleneck Model1 Jun 2026
- 2026Semantic Class Distribution Learning for Debiasing Semi-Supervised Medical Image Segmentation5 Mar 2026
- 2026Gradient based Severity Labeling for Biomarker Classification in OCT23 Feb 2026
- 2025Dual-supervised Asymmetric Co-training for Semi-supervised Medical Domain Generalization25 Sep 2025
- 2025A Comprehensive Study on Medical Image Segmentation using Deep Neural Networks4 Jun 2025
- 2025Co-Evidential Fusion with Information Volume for Medical Image Segmentation3 Jun 2025
- 2025DyCON: Dynamic Uncertainty-aware Consistency and Contrastive Learning for Semi-supervised Medical Image Segmentation6 Apr 2025
- 2025Balancing Multi-Target Semi-Supervised Medical Image Segmentation with Collaborative Generalist and Specialists1 Apr 2025
- 2025ERANet: Edge Replacement Augmentation for Semi-Supervised Meniscus Segmentation with Prototype Consistency Alignment and Conditional Self-Training11 Feb 2025
- 2024Synergy-Guided Regional Supervision of Pseudo Labels for Semi-Supervised Medical Image Segmentation7 Nov 2024
- 2024Enhancing 3D Transformer Segmentation Model for Medical Image with Token-level Representation Learning12 Aug 2024
- 2024An Evidential-enhanced Tri-Branch Consistency Learning Method for Semi-supervised Medical Image Segmentation10 Apr 2024
30 more
- 2024FPL+: Filtered Pseudo Label-based Unsupervised Cross-Modality Adaptation for 3D Medical Image Segmentation7 Apr 2024
- 2024Inter- and intra-uncertainty based feature aggregation model for semi-supervised histopathology image segmentation19 Mar 2024
- 2024Self and Mixed Supervision to Improve Training Labels for Multi-Class Medical Image Segmentation6 Mar 2024
- 2024Few-Shot Learning for Annotation-Efficient Nucleus Instance Segmentation26 Feb 2024
- 2023Interpretability-guided Data Augmentation for Robust Segmentation in Multi-centre Colonoscopy Data30 Aug 2023
- 2023Fine-Grained Self-Supervised Learning with Jigsaw Puzzles for Medical Image Classification10 Aug 2023
- 2023NP-SemiSeg: When Neural Processes meet Semi-Supervised Semantic Segmentation5 Aug 2023
- 2023Semi-Supervised Medical Image Segmentation with Co-Distribution Alignment24 Jul 2023
- 2023Expectation Maximization Pseudo Labels2 May 2023
- 2023Label-Efficient Deep Learning in Medical Image Analysis: Challenges and Future Directions22 Mar 2023
- 2023Clinically Acceptable Segmentation of Organs at Risk in Cervical Cancer Radiation Treatment from Clinically Available Annotations21 Feb 2023
- 2023A Review of Predictive and Contrastive Self-supervised Learning for Medical Images10 Feb 2023
- 2023Active Learning in Brain Tumor Segmentation with Uncertainty Sampling, Annotation Redundancy Restriction, and Data Initialization5 Feb 2023
- 2023Self-Supervised Correction Learning for Semi-Supervised Biomedical Image Segmentation12 Jan 2023
- 2022Which Pixel to Annotate: a Label-Efficient Nuclei Segmentation Framework20 Dec 2022
- 2022Did You Get What You Paid For? Rethinking Annotation Cost of Deep Learning Based Computer Aided Detection in Chest Radiographs30 Sep 2022
- 2022Bayesian Pseudo Labels: Expectation Maximization for Robust and Efficient Semi-Supervised Segmentation8 Aug 2022
- 2022Teachers in concordance for pseudo-labeling of 3D sequential data13 Jul 2022
- 2022Mutual- and Self- Prototype Alignment for Semi-supervised Medical Image Segmentation3 Jun 2022
- 2022WSSS4LUAD: Grand Challenge on Weakly-supervised Tissue Semantic Segmentation for Lung Adenocarcinoma13 Apr 2022
- 2022On the pitfalls of entropy-based uncertainty for multi-class semi-supervised segmentation7 Mar 2022
- 2022Adversarial Dual-Student with Differentiable Spatial Warping for Semi-Supervised Semantic Segmentation5 Mar 2022
- 2022Deep learning based domain adaptation for mitochondria segmentation on EM volumes22 Feb 2022
- 2022Estimating Egocentric 3D Human Pose in the Wild with External Weak Supervision20 Jan 2022
- 2021Exploring Feature Representation Learning for Semi-supervised Medical Image Segmentation22 Nov 2021
- 2021Uncertainty-Aware Semi-Supervised Few Shot Segmentation18 Oct 2021
- 2021Multi-Layer Pseudo-Supervision for Histopathology Tissue Semantic Segmentation using Patch-level Classification Labels14 Oct 2021
- 2021Self-supervised learning methods and applications in medical imaging analysis: A survey17 Sep 2021
- 2021Semi-supervised Meta-learning with Disentanglement for Domain-generalised Medical Image Segmentation24 Jun 2021
- 2021Medical Image Segmentation with Limited Supervision: A Review of Deep Network Models28 Feb 2021
- 2021Self-supervised learning methods and applications in medical imaging analysis: A surveycited by 76
- 2021Multi-Layer Pseudo-Supervision for Histopathology Tissue Semantic Segmentation using Patch-level Classification Labelscited by 43
- 2021Semi-supervised Meta-learning with Disentanglement for Domain-generalised Medical Image Segmentationcited by 36
- 2022Estimating Egocentric 3D Human Pose in the Wild with External Weak Supervisioncited by 33
- 2022WSSS4LUAD: Grand Challenge on Weakly-supervised Tissue Semantic Segmentation for Lung Adenocarcinomacited by 32
- 2021Medical Image Segmentation with Limited Supervision: A Review of Deep Network Modelscited by 21
- 2022Which Pixel to Annotate: a Label-Efficient Nuclei Segmentation Frameworkcited by 14
- 2023Label-Efficient Deep Learning in Medical Image Analysis: Challenges and Future Directionscited by 14
- 2021Exploring Feature Representation Learning for Semi-supervised Medical Image Segmentationcited by 11
- 2023A Review of Predictive and Contrastive Self-supervised Learning for Medical Imagescited by 10
- 2024FPL+: Filtered Pseudo Label-based Unsupervised Cross-Modality Adaptation for 3D Medical Image Segmentationcited by 10
- 2022Adversarial Dual-Student with Differentiable Spatial Warping for Semi-Supervised Semantic Segmentationcited by 9
12 most cited of 42 All 42 (JSON)
- 2026Learning Label-Efficient Interpretable Medical Image Diagnosis via Semi-supervised Hypergraph Concept Bottleneck Model1 Jun 2026
- 2026Semantic Class Distribution Learning for Debiasing Semi-Supervised Medical Image Segmentation5 Mar 2026
- 2026Gradient based Severity Labeling for Biomarker Classification in OCT23 Feb 2026
- 2025Dual-supervised Asymmetric Co-training for Semi-supervised Medical Domain Generalization25 Sep 2025
- 2025A Comprehensive Study on Medical Image Segmentation using Deep Neural Networks4 Jun 2025
- 2025Co-Evidential Fusion with Information Volume for Medical Image Segmentation3 Jun 2025
- 2025DyCON: Dynamic Uncertainty-aware Consistency and Contrastive Learning for Semi-supervised Medical Image Segmentation6 Apr 2025
- 2025Balancing Multi-Target Semi-Supervised Medical Image Segmentation with Collaborative Generalist and Specialists1 Apr 2025
- 2025ERANet: Edge Replacement Augmentation for Semi-Supervised Meniscus Segmentation with Prototype Consistency Alignment and Conditional Self-Training11 Feb 2025
- 2024Synergy-Guided Regional Supervision of Pseudo Labels for Semi-Supervised Medical Image Segmentation7 Nov 2024
- 2024Enhancing 3D Transformer Segmentation Model for Medical Image with Token-level Representation Learning12 Aug 2024
- 2024An Evidential-enhanced Tri-Branch Consistency Learning Method for Semi-supervised Medical Image Segmentation10 Apr 2024
12 newest of 42 All 42 (JSON)