Explainable Classification of Brain Networks via Contrast Subgraphs
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Abstract (arXiv)
Mining human-brain networks to discover patterns that can be used to discriminate between healthy individuals and patients affected by some neurological disorder, is a fundamental task in neuroscience. Learning simple and interpretable models is as important as mere classification accuracy. In this paper we introduce a novel approach for classifying brain networks based on extracting contrast subgraphs, i.e., a set of vertices whose induced subgraphs are dense in one class of graphs and sparse in the other. We formally define the problem and present an algorithmic solution for extracting contrast subgraphs. We then apply our method to a brain-network dataset consisting of children affected by Autism Spectrum Disorder and children Typically Developed. Our analysis confirms the interestingness of the discovered patterns, which match background knowledge in the neuroscience literature. Further analysis on other classification tasks confirm the simplicity, soundness, and high explainability of our proposal, which also exhibits superior classification accuracy, to more complex state-of-the-art methods.
Key facts. Cited by 26 papers in the map (data through 7 Oct 2026). First posted on arXiv 9 Jun 2020.
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Citing papers per year: 2021: 4; 2022: 7; 2023: 8; 2024: 3; 2025: 4.
26 papers.
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- 2023Towards Self-Interpretable Graph-Level Anomaly Detectioncited by 41
- 2021Counterfactual Graphs for Explainable Classification of Brain Networkscited by 33
- 2022A Survey on Graph Counterfactual Explanations: Definitions, Methods, Evaluation, and Research Challengescited by 30
- 2025A Comprehensive Survey on Self-Interpretable Neural Networkscited by 18
- 2024Rethinking Reconstruction-based Graph-Level Anomaly Detection: Limitations and a Simple Remedycited by 13
- 2022Data-Driven Network Neuroscience: On Data Collection and Benchmarkcited by 12
- 2023Deep Orthogonal Hypersphere Compression for Anomaly Detectioncited by 12
- 2024Contrasformer: A Brain Network Contrastive Transformer for Neurodegenerative Condition Identificationcited by 12
- 2023A Survey on the Densest Subgraph Problem and Its Variantscited by 8
- 2025BrainOOD: Out-of-distribution Generalizable Brain Network Analysiscited by 7
- 2022GRAPHSHAP: Explaining Identity-Aware Graph Classifiers Through the Language of Motifscited by 6
- 2022GRETEL: A unified framework for Graph Counterfactual Explanation Evaluationcited by 6
14 more
- 2022Anomaly Detection in Multiplex Dynamic Networks: from Blockchain Security to Brain Disease Predictioncited by 6
- 2023State of the Art and Potentialities of Graph-level Learningcited by 6
- 2024Multi-Atlas Brain Network Classification through Consistency Distillation and Complementary Information Fusioncited by 6
- 2021The Generalized Mean Densest Subgraph Problemcited by 5
- 2021Self-learn to Explain Siamese Networks Robustlycited by 5
- 2022CS-MLGCN : Multiplex Graph Convolutional Networks for Community Search in Multiplex Networkscited by 5
- 2023Contrastive Graph Pooling for Explainable Classification of Brain Networkscited by 5
- 2023Counterfactual Explanations for Graph Classification Through the Lenses of Densitycited by 2
- 2025Learnable Kernel Density Estimation for Graphs and Its Application to Graph-Level Anomaly Detectioncited by 2
- 2021Differentially Describing Groups of Graphscited by 1
- 2022Graph-level Neural Networks: Current Progress and Future Directionscited by 0
- 2023TiBGL: Template-induced Brain Graph Learning for Functional Neuroimaging Analysiscited by 0
- 2023Faster Algorithms for Generalized Mean Densest Subgraph Problemcited by 0
- 2025Rethinking Contrastive Learning in Graph Anomaly Detection: A Clean-View Perspectivecited by 0
- 2025Learnable Kernel Density Estimation for Graphs and Its Application to Graph-Level Anomaly Detection27 May 2025
- 2025Rethinking Contrastive Learning in Graph Anomaly Detection: A Clean-View Perspective23 May 2025
- 2025BrainOOD: Out-of-distribution Generalizable Brain Network Analysis2 Feb 2025
- 2025A Comprehensive Survey on Self-Interpretable Neural Networks26 Jan 2025
- 2024Rethinking Reconstruction-based Graph-Level Anomaly Detection: Limitations and a Simple Remedy27 Oct 2024
- 2024Multi-Atlas Brain Network Classification through Consistency Distillation and Complementary Information Fusion28 Sep 2024
- 2024Contrasformer: A Brain Network Contrastive Transformer for Neurodegenerative Condition Identification17 Sep 2024
- 2023Towards Self-Interpretable Graph-Level Anomaly Detection25 Oct 2023
- 2023Faster Algorithms for Generalized Mean Densest Subgraph Problem17 Oct 2023
- 2023TiBGL: Template-induced Brain Graph Learning for Functional Neuroimaging Analysis14 Sep 2023
- 2023Counterfactual Explanations for Graph Classification Through the Lenses of Density27 Jul 2023
- 2023Contrastive Graph Pooling for Explainable Classification of Brain Networks7 Jul 2023
14 more
- 2023A Survey on the Densest Subgraph Problem and Its Variants25 Mar 2023
- 2023Deep Orthogonal Hypersphere Compression for Anomaly Detection13 Feb 2023
- 2023State of the Art and Potentialities of Graph-level Learning14 Jan 2023
- 2022Anomaly Detection in Multiplex Dynamic Networks: from Blockchain Security to Brain Disease Prediction15 Nov 2022
- 2022Data-Driven Network Neuroscience: On Data Collection and Benchmark11 Nov 2022
- 2022A Survey on Graph Counterfactual Explanations: Definitions, Methods, Evaluation, and Research Challenges21 Oct 2022
- 2022CS-MLGCN : Multiplex Graph Convolutional Networks for Community Search in Multiplex Networks17 Oct 2022
- 2022GRETEL: A unified framework for Graph Counterfactual Explanation Evaluation7 Jun 2022
- 2022Graph-level Neural Networks: Current Progress and Future Directions31 May 2022
- 2022GRAPHSHAP: Explaining Identity-Aware Graph Classifiers Through the Language of Motifs17 Feb 2022
- 2021Differentially Describing Groups of Graphs16 Dec 2021
- 2021Self-learn to Explain Siamese Networks Robustly15 Sep 2021
- 2021Counterfactual Graphs for Explainable Classification of Brain Networks16 Jun 2021
- 2021The Generalized Mean Densest Subgraph Problem2 Jun 2021
- 2023Towards Self-Interpretable Graph-Level Anomaly Detectioncited by 41
- 2021Counterfactual Graphs for Explainable Classification of Brain Networkscited by 33
- 2022A Survey on Graph Counterfactual Explanations: Definitions, Methods, Evaluation, and Research Challengescited by 30
- 2025A Comprehensive Survey on Self-Interpretable Neural Networkscited by 18
- 2024Rethinking Reconstruction-based Graph-Level Anomaly Detection: Limitations and a Simple Remedycited by 13
- 2022Data-Driven Network Neuroscience: On Data Collection and Benchmarkcited by 12
- 2023Deep Orthogonal Hypersphere Compression for Anomaly Detectioncited by 12
- 2024Contrasformer: A Brain Network Contrastive Transformer for Neurodegenerative Condition Identificationcited by 12
- 2023A Survey on the Densest Subgraph Problem and Its Variantscited by 8
- 2025BrainOOD: Out-of-distribution Generalizable Brain Network Analysiscited by 7
- 2022GRAPHSHAP: Explaining Identity-Aware Graph Classifiers Through the Language of Motifscited by 6
- 2022GRETEL: A unified framework for Graph Counterfactual Explanation Evaluationcited by 6
12 most cited of 26 All 26 (JSON)
- 2025Learnable Kernel Density Estimation for Graphs and Its Application to Graph-Level Anomaly Detection27 May 2025
- 2025Rethinking Contrastive Learning in Graph Anomaly Detection: A Clean-View Perspective23 May 2025
- 2025BrainOOD: Out-of-distribution Generalizable Brain Network Analysis2 Feb 2025
- 2025A Comprehensive Survey on Self-Interpretable Neural Networks26 Jan 2025
- 2024Rethinking Reconstruction-based Graph-Level Anomaly Detection: Limitations and a Simple Remedy27 Oct 2024
- 2024Multi-Atlas Brain Network Classification through Consistency Distillation and Complementary Information Fusion28 Sep 2024
- 2024Contrasformer: A Brain Network Contrastive Transformer for Neurodegenerative Condition Identification17 Sep 2024
- 2023Towards Self-Interpretable Graph-Level Anomaly Detection25 Oct 2023
- 2023Faster Algorithms for Generalized Mean Densest Subgraph Problem17 Oct 2023
- 2023TiBGL: Template-induced Brain Graph Learning for Functional Neuroimaging Analysis14 Sep 2023
- 2023Counterfactual Explanations for Graph Classification Through the Lenses of Density27 Jul 2023
- 2023Contrastive Graph Pooling for Explainable Classification of Brain Networks7 Jul 2023
12 newest of 26 All 26 (JSON)