An analysis on the use of autoencoders for representation learning: fundamentals, learning task case studies, explainability and challenges
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Abstract (arXiv)
In many machine learning tasks, learning a good representation of the data can be the key to building a well-performant solution. This is because most learning algorithms operate with the features in order to find models for the data. For instance, classification performance can improve if the data is mapped to a space where classes are easily separated, and regression can be facilitated by finding a manifold of data in the feature space. As a general rule, features are transformed by means of statistical methods such as principal component analysis, or manifold learning techniques such as Isomap or locally linear embedding. From a plethora of representation learning methods, one of the most versatile tools is the autoencoder. In this paper we aim to demonstrate how to influence its learned representations to achieve the desired learning behavior. To this end, we present a series of learning tasks: data embedding for visualization, image denoising, semantic hashing, detection of abnormal behaviors and instance generation. We model them from the representation learning perspective, following the state of the art methodologies in each field. A solution is proposed for each task employing autoencoders as the only learning method. The theoretical developments are put into practice using a selection of datasets for the different problems and implementing each solution, followed by a discussion of the results in each case study and a brief explanation of other six learning applications. We also explore the current challenges and approaches to explainability in the context of autoencoders. All of this helps conclude that, thanks to alterations in their structure as well as their objective function, autoencoders may be the core of a possible solution to many problems which can be modeled as a transformation of the feature space.
Key facts. Cited by 12 papers in the map (data through 7 Oct 2026). First posted on arXiv 21 May 2020.
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Citing papers per year: 2021: 2; 2022: 1; 2023: 1; 2024: 1; 2025: 6; 2026: 1.
12 papers.
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- 2021Reducing Data Complexity using Autoencoders with Class-informed Loss Functionscited by 3
- 2026Text as a Universal Interface for Transferable Personalizationcited by 2
- 2022Representing Camera Response Function by a Single Latent Variable and Fully Connected Neural Networkcited by 1
- 2024Trading through Earnings Seasons using Self-Supervised Contrastive Representation Learningcited by 1
- 2025EVolutionary Independent DEtermiNistiC Explanationcited by 0
- 2025GPO-VAE: Modeling Explainable Gene Perturbation Responses utilizing GRN-Aligned Parameter Optimizationcited by 0
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- 2025Repeating versus Nonrepeating Fast Radio Bursts: A Deep Learning Approach to Morphological Characterizationcited by 0
- 2025Benchmark-Ready 3D Anatomical Shape Classificationcited by 0
- 2025Recursive Threshold Median Filter and Autoencoder for Salt-and-Pepper Denoising: SSIM analysis of Images and Entropy Mapscited by 0
- 2026Text as a Universal Interface for Transferable Personalization8 Jan 2026
- 2025Recursive Threshold Median Filter and Autoencoder for Salt-and-Pepper Denoising: SSIM analysis of Images and Entropy Maps15 Nov 2025
- 2025Benchmark-Ready 3D Anatomical Shape Classification3 Nov 2025
- 2025Repeating versus Nonrepeating Fast Radio Bursts: A Deep Learning Approach to Morphological Characterization7 Sep 2025
- 2025MUPAX: Multidimensional Problem Agnostic eXplainable AI17 Jul 2025
- 2025GPO-VAE: Modeling Explainable Gene Perturbation Responses utilizing GRN-Aligned Parameter Optimization31 Jan 2025
- 2025EVolutionary Independent DEtermiNistiC Explanation20 Jan 2025
- 2024Trading through Earnings Seasons using Self-Supervised Contrastive Representation Learning25 Sep 2024
- 2023DoE2Vec: Deep-learning Based Features for Exploratory Landscape Analysis31 Mar 2023
- 2022Representing Camera Response Function by a Single Latent Variable and Fully Connected Neural Network8 Sep 2022
- 2021Reducing Data Complexity using Autoencoders with Class-informed Loss Functions11 Nov 2021
- 2021Exploiting auto-encoders and segmentation methods for middle-level explanations of image classification systems9 Jun 2021