Explicitly disentangling image content from translation and rotation with spatial-VAE
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Abstract (arXiv)
Given an image dataset, we are often interested in finding data generative factors that encode semantic content independently from pose variables such as rotation and translation. However, current disentanglement approaches do not impose any specific structure on the learned latent representations. We propose a method for explicitly disentangling image rotation and translation from other unstructured latent factors in a variational autoencoder (VAE) framework. By formulating the generative model as a function of the spatial coordinate, we make the reconstruction error differentiable with respect to latent translation and rotation parameters. This formulation allows us to train a neural network to perform approximate inference on these latent variables while explicitly constraining them to only represent rotation and translation. We demonstrate that this framework, termed spatial-VAE, effectively learns latent representations that disentangle image rotation and translation from content and improves reconstruction over standard VAEs on several benchmark datasets, including applications to modeling continuous 2-D views of proteins from single particle electron microscopy and galaxies in astronomical images.
Key facts. Cited by 28 papers in the map (data through 7 Oct 2026). First posted on arXiv 25 Sep 2019.
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Citing papers per year: 2021: 8; 2022: 6; 2023: 6; 2024: 3; 2025: 3; 2026: 2.
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- 2021Improved Transformer for High-Resolution GANscited by 59
- 2022Amortized Inference for Heterogeneous Reconstruction in Cryo-EMcited by 23
- 2021Unsupervised Deep Learning Methods for Biological Image Reconstruction and Enhancementcited by 17
- 2021Physics-informed Guided Disentanglement in Generative Networkscited by 9
- 2022Review of Disentanglement Approaches for Medical Applications -- Towards Solving the Gordian Knot of Generative Models in Healthcarecited by 9
- 2022Unsupervised Object Representation Learning using Translation and Rotation Group Equivariant VAEcited by 8
- 2023Deep Kernel Methods Learn Better: From Cards to Process Optimizationcited by 7
- 2023Physics and Chemistry from Parsimonious Representations: Image Analysis via Invariant Variational Autoencoderscited by 7
- 2021Learning Rotation Invariant Features for Cryogenic Electron Microscopy Image Reconstructioncited by 5
- 2021Finding simplicity: unsupervised discovery of features, patterns, and order parameters via shift-invariant variational autoencoderscited by 4
- 2023MELON: NeRF with Unposed Images in SO(3)cited by 4
- 2023Generative modeling of living cells with SO(3)-equivariant implicit neural representationscited by 4
16 more
- 2023Rotation and Translation Invariant Representation Learning with Implicit Neural Representationscited by 4
- 2022Equivariant Priors for Compressed Sensing with Unknown Orientationcited by 3
- 2025Integrating Predictive and Generative Capabilities by Latent Space Design via the DKL-VAE Modelcited by 3
- 2025Cloning Deterministic Worlds: The Critical Role of Latent Geometry in Long-Horizon World Modelscited by 3
- 2021Automated and Autonomous Experiment in Electron and Scanning Probe Microscopycited by 1
- 2021Invariance-based Multi-Clustering of Latent Space Embeddings for Equivariant Learningcited by 1
- 2022Affinity-VAE: incorporating prior knowledge in representation learning from scientific imagescited by 1
- 2024Equivariant amortized inference of poses for cryo-EMcited by 1
- 2025Reward driven discovery of the optimal microstructure representations with invariant variational autoencoderscited by 1
- 2021Disentangling semantic features of macromolecules in Cryo-Electron Tomographycited by 0
- 2022Microscopy is All You Needcited by 0
- 2023Domain Generalization In Robust Invariant Representationcited by 0
- 2024DualContrast: Unsupervised Disentangling of Content and Transformations with Implicit Parameterizationcited by 0
- 2024Distance-Preserving Representations for Genomic Spatial Reconstructioncited by 0
- 2026Unsupervised SE(3) Disentanglement for in situ Macromolecular Morphology Identification from Cryo-Electron Tomographycited by 0
- 2026Equivariant Latent Alignment via Flow Matching under Group Symmetriescited by 0
- 2026Equivariant Latent Alignment via Flow Matching under Group Symmetries29 May 2026
- 2026Unsupervised SE(3) Disentanglement for in situ Macromolecular Morphology Identification from Cryo-Electron Tomography4 Jan 2026
- 2025Cloning Deterministic Worlds: The Critical Role of Latent Geometry in Long-Horizon World Models30 Oct 2025
- 2025Reward driven discovery of the optimal microstructure representations with invariant variational autoencoders30 Sep 2025
- 2025Integrating Predictive and Generative Capabilities by Latent Space Design via the DKL-VAE Model4 Mar 2025
- 2024Distance-Preserving Representations for Genomic Spatial Reconstruction1 Aug 2024
- 2024Equivariant amortized inference of poses for cryo-EM1 Jun 2024
- 2024DualContrast: Unsupervised Disentangling of Content and Transformations with Implicit Parameterization27 May 2024
- 2023Rotation and Translation Invariant Representation Learning with Implicit Neural Representations27 Apr 2023
- 2023Generative modeling of living cells with SO(3)-equivariant implicit neural representations18 Apr 2023
- 2023Domain Generalization In Robust Invariant Representation7 Apr 2023
- 2023Physics and Chemistry from Parsimonious Representations: Image Analysis via Invariant Variational Autoencoders30 Mar 2023
16 more
- 2023Deep Kernel Methods Learn Better: From Cards to Process Optimization25 Mar 2023
- 2023MELON: NeRF with Unposed Images in SO(3)14 Mar 2023
- 2022Unsupervised Object Representation Learning using Translation and Rotation Group Equivariant VAE24 Oct 2022
- 2022Amortized Inference for Heterogeneous Reconstruction in Cryo-EM13 Oct 2022
- 2022Microscopy is All You Need12 Oct 2022
- 2022Affinity-VAE: incorporating prior knowledge in representation learning from scientific images9 Sep 2022
- 2022Equivariant Priors for Compressed Sensing with Unknown Orientation28 Jun 2022
- 2022Review of Disentanglement Approaches for Medical Applications -- Towards Solving the Gordian Knot of Generative Models in Healthcare21 Mar 2022
- 2021Physics-informed Guided Disentanglement in Generative Networks29 Jul 2021
- 2021Invariance-based Multi-Clustering of Latent Space Embeddings for Equivariant Learning25 Jul 2021
- 2021Disentangling semantic features of macromolecules in Cryo-Electron Tomography27 Jun 2021
- 2021Finding simplicity: unsupervised discovery of features, patterns, and order parameters via shift-invariant variational autoencoders23 Jun 2021
- 2021Improved Transformer for High-Resolution GANs14 Jun 2021
- 2021Unsupervised Deep Learning Methods for Biological Image Reconstruction and Enhancement17 May 2021
- 2021Automated and Autonomous Experiment in Electron and Scanning Probe Microscopy22 Mar 2021
- 2021Learning Rotation Invariant Features for Cryogenic Electron Microscopy Image Reconstruction10 Jan 2021
- 2021Improved Transformer for High-Resolution GANscited by 59
- 2022Amortized Inference for Heterogeneous Reconstruction in Cryo-EMcited by 23
- 2021Unsupervised Deep Learning Methods for Biological Image Reconstruction and Enhancementcited by 17
- 2021Physics-informed Guided Disentanglement in Generative Networkscited by 9
- 2022Review of Disentanglement Approaches for Medical Applications -- Towards Solving the Gordian Knot of Generative Models in Healthcarecited by 9
- 2022Unsupervised Object Representation Learning using Translation and Rotation Group Equivariant VAEcited by 8
- 2023Deep Kernel Methods Learn Better: From Cards to Process Optimizationcited by 7
- 2023Physics and Chemistry from Parsimonious Representations: Image Analysis via Invariant Variational Autoencoderscited by 7
- 2021Learning Rotation Invariant Features for Cryogenic Electron Microscopy Image Reconstructioncited by 5
- 2021Finding simplicity: unsupervised discovery of features, patterns, and order parameters via shift-invariant variational autoencoderscited by 4
- 2023MELON: NeRF with Unposed Images in SO(3)cited by 4
- 2023Generative modeling of living cells with SO(3)-equivariant implicit neural representationscited by 4
12 most cited of 26 All 26 (JSON)
- 2026Unsupervised SE(3) Disentanglement for in situ Macromolecular Morphology Identification from Cryo-Electron Tomography4 Jan 2026
- 2025Reward driven discovery of the optimal microstructure representations with invariant variational autoencoders30 Sep 2025
- 2025Integrating Predictive and Generative Capabilities by Latent Space Design via the DKL-VAE Model4 Mar 2025
- 2024Distance-Preserving Representations for Genomic Spatial Reconstruction1 Aug 2024
- 2024Equivariant amortized inference of poses for cryo-EM1 Jun 2024
- 2024DualContrast: Unsupervised Disentangling of Content and Transformations with Implicit Parameterization27 May 2024
- 2023Rotation and Translation Invariant Representation Learning with Implicit Neural Representations27 Apr 2023
- 2023Generative modeling of living cells with SO(3)-equivariant implicit neural representations18 Apr 2023
- 2023Domain Generalization In Robust Invariant Representation7 Apr 2023
- 2023Physics and Chemistry from Parsimonious Representations: Image Analysis via Invariant Variational Autoencoders30 Mar 2023
- 2023Deep Kernel Methods Learn Better: From Cards to Process Optimization25 Mar 2023
- 2023MELON: NeRF with Unposed Images in SO(3)14 Mar 2023
12 newest of 26 All 26 (JSON)