Importance of spatial predictor variable selection in machine learning applications -- Moving from data reproduction to spatial prediction
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Abstract (arXiv)
Machine learning algorithms find frequent application in spatial prediction of biotic and abiotic environmental variables. However, the characteristics of spatial data, especially spatial autocorrelation, are widely ignored. We hypothesize that this is problematic and results in models that can reproduce training data but are unable to make spatial predictions beyond the locations of the training samples. We assume that not only spatial validation strategies but also spatial variable selection is essential for reliable spatial predictions. We introduce two case studies that use remote sensing to predict land cover and the leaf area index for the "Marburg Open Forest", an open research and education site of Marburg University, Germany. We use the machine learning algorithm Random Forests to train models using non-spatial and spatial cross-validation strategies to understand how spatial variable selection affects the predictions. Our findings confirm that spatial cross-validation is essential in preventing overoptimistic model performance. We further show that highly autocorrelated predictors (such as geolocation variables, e.g. latitude, longitude) can lead to considerable overfitting and result in models that can reproduce the training data but fail in making spatial predictions. The problem becomes apparent in the visual assessment of the spatial predictions that show clear artefacts that can be traced back to a misinterpretation of the spatially autocorrelated predictors by the algorithm. Spatial variable selection could automatically detect and remove such variables that lead to overfitting, resulting in reliable spatial prediction patterns and improved statistical spatial model performance. We conclude that in addition to spatial validation, a spatial variable selection must be considered in spatial predictions of ecological data to produce reliable predictions.
Key facts. Cited by 24 papers in the map (data through 13 Oct 2026). First posted on arXiv 21 Aug 2019.
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Citing papers per year: 2021: 3; 2022: 2; 2023: 4; 2024: 3; 2025: 3; 2026: 9.
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- 2023Better, Not Just More: Data-Centric Machine Learning for Earth Observationcited by 19
- 2023Evaluation Challenges for Geospatial MLcited by 9
- 2024Contrasting local and global modeling with machine learning and satellite data: A case study estimating tree canopy height in African savannascited by 6
- 2021Continental-scale land cover mapping at 10 m resolution over Europe (ELC10)cited by 4
- 2021Earthquake Nowcasting with Deep Learningcited by 3
- 2026CITYREP: A Unified Benchmark for Urban Representations Across Cities, Tasks, and Modalitiescited by 3
- 2025DeepTopoNet: A Framework for Subglacial Topography Estimation on the Greenland Ice Sheetscited by 2
- 2022Using Machine Learning to generate an open-access cropland map from satellite images time series in the Indian Himalayan Regioncited by 1
- 2023A path in regression Random Forest looking for spatial dependence: a taxonomy and a systematic reviewcited by 1
- 2023Challenges in data-based geospatial modeling for environmental research and practicecited by 1
- 2024The CAST package for training and assessment of spatial prediction models in Rcited by 1
- 2025Improving Greenland Bed Topography Mapping with Uncertainty-Aware Graph Learning on Sparse Radar Datacited by 1
12 more
- 2021Autocart -- spatially-aware regression trees for ecological and spatial modelingcited by 0
- 2022A Machine Learning Approach for Material Type Logging and Chemical Assaying from Autonomous Measure-While-Drilling (MWD) Datacited by 0
- 2024Variable importance measure for spatial machine learning models with application to air pollution exposure predictioncited by 0
- 2025Enhancing Poverty Targeting with Spatial Machine Learning: An application to Indonesiacited by 0
- 2026Mapping Drivers of Greenness: Spatial Variable Selection for MODIS Vegetation Indicescited by 0
- 2026Decoupling Distance and Networks: Hybrid Graph Attention-Geostatistical Methods for Spatio-temporal Risk Mappingcited by 0
- 2026Evaluating Supervised Machine Learning Models: Principles, Pitfalls, and Metric Selectioncited by 0
- 2026STeMP: Spatio-Temporal Modelling Protocolcited by 0
- 2026The Cost of a Physics Prior Is Bounded by the Ablation Gapcited by 0
- 2026Forward-Facing Near-Infrared Adds Little to Colour for Farm-Machinery Traversability: A Site-Disjoint Evaluation of Sensor-Dependent Spatial Leakagecited by 0
- 2026GeoDose-CP: Graph-Local Conformal Inference for Continuous-Treatment Earth Observationcited by 0
- 2026Autoregressive Drillhole Modelling Under Distribution Shiftcited by 0
- 2026Autoregressive Drillhole Modelling Under Distribution Shift1 Oct 2026
- 2026GeoDose-CP: Graph-Local Conformal Inference for Continuous-Treatment Earth Observation24 Sep 2026
- 2026Forward-Facing Near-Infrared Adds Little to Colour for Farm-Machinery Traversability: A Site-Disjoint Evaluation of Sensor-Dependent Spatial Leakage7 Sep 2026
- 2026The Cost of a Physics Prior Is Bounded by the Ablation Gap21 Aug 2026
- 2026STeMP: Spatio-Temporal Modelling Protocol22 Jul 2026
- 2026CITYREP: A Unified Benchmark for Urban Representations Across Cities, Tasks, and Modalities25 May 2026
- 2026Evaluating Supervised Machine Learning Models: Principles, Pitfalls, and Metric Selection15 Apr 2026
- 2026Decoupling Distance and Networks: Hybrid Graph Attention-Geostatistical Methods for Spatio-temporal Risk Mapping9 Mar 2026
- 2026Mapping Drivers of Greenness: Spatial Variable Selection for MODIS Vegetation Indices7 Feb 2026
- 2025Improving Greenland Bed Topography Mapping with Uncertainty-Aware Graph Learning on Sparse Radar Data10 Sep 2025
- 2025DeepTopoNet: A Framework for Subglacial Topography Estimation on the Greenland Ice Sheets29 May 2025
- 2025Enhancing Poverty Targeting with Spatial Machine Learning: An application to Indonesia6 Mar 2025
12 more
- 2024Contrasting local and global modeling with machine learning and satellite data: A case study estimating tree canopy height in African savannas21 Nov 2024
- 2024Variable importance measure for spatial machine learning models with application to air pollution exposure prediction4 Jun 2024
- 2024The CAST package for training and assessment of spatial prediction models in R10 Apr 2024
- 2023Better, Not Just More: Data-Centric Machine Learning for Earth Observation8 Dec 2023
- 2023Challenges in data-based geospatial modeling for environmental research and practice18 Nov 2023
- 2023Evaluation Challenges for Geospatial ML31 Mar 2023
- 2023A path in regression Random Forest looking for spatial dependence: a taxonomy and a systematic review8 Mar 2023
- 2022Using Machine Learning to generate an open-access cropland map from satellite images time series in the Indian Himalayan Region28 Mar 2022
- 2022A Machine Learning Approach for Material Type Logging and Chemical Assaying from Autonomous Measure-While-Drilling (MWD) Data7 Feb 2022
- 2021Earthquake Nowcasting with Deep Learning18 Dec 2021
- 2021Continental-scale land cover mapping at 10 m resolution over Europe (ELC10)22 Apr 2021
- 2021Autocart -- spatially-aware regression trees for ecological and spatial modeling20 Jan 2021
- 2023Better, Not Just More: Data-Centric Machine Learning for Earth Observationcited by 19
- 2023Evaluation Challenges for Geospatial MLcited by 9
- 2024Contrasting local and global modeling with machine learning and satellite data: A case study estimating tree canopy height in African savannascited by 6
- 2021Continental-scale land cover mapping at 10 m resolution over Europe (ELC10)cited by 4
- 2021Earthquake Nowcasting with Deep Learningcited by 3
- 2026CITYREP: A Unified Benchmark for Urban Representations Across Cities, Tasks, and Modalitiescited by 3
- 2025DeepTopoNet: A Framework for Subglacial Topography Estimation on the Greenland Ice Sheetscited by 2
- 2022Using Machine Learning to generate an open-access cropland map from satellite images time series in the Indian Himalayan Regioncited by 1
- 2023A path in regression Random Forest looking for spatial dependence: a taxonomy and a systematic reviewcited by 1
- 2023Challenges in data-based geospatial modeling for environmental research and practicecited by 1
- 2024The CAST package for training and assessment of spatial prediction models in Rcited by 1
- 2025Improving Greenland Bed Topography Mapping with Uncertainty-Aware Graph Learning on Sparse Radar Datacited by 1
12 most cited of 24 All 24 (JSON)
- 2026Autoregressive Drillhole Modelling Under Distribution Shift1 Oct 2026
- 2026GeoDose-CP: Graph-Local Conformal Inference for Continuous-Treatment Earth Observation24 Sep 2026
- 2026Forward-Facing Near-Infrared Adds Little to Colour for Farm-Machinery Traversability: A Site-Disjoint Evaluation of Sensor-Dependent Spatial Leakage7 Sep 2026
- 2026The Cost of a Physics Prior Is Bounded by the Ablation Gap21 Aug 2026
- 2026STeMP: Spatio-Temporal Modelling Protocol22 Jul 2026
- 2026CITYREP: A Unified Benchmark for Urban Representations Across Cities, Tasks, and Modalities25 May 2026
- 2026Evaluating Supervised Machine Learning Models: Principles, Pitfalls, and Metric Selection15 Apr 2026
- 2026Decoupling Distance and Networks: Hybrid Graph Attention-Geostatistical Methods for Spatio-temporal Risk Mapping9 Mar 2026
- 2026Mapping Drivers of Greenness: Spatial Variable Selection for MODIS Vegetation Indices7 Feb 2026
- 2025Improving Greenland Bed Topography Mapping with Uncertainty-Aware Graph Learning on Sparse Radar Data10 Sep 2025
- 2025DeepTopoNet: A Framework for Subglacial Topography Estimation on the Greenland Ice Sheets29 May 2025
- 2025Enhancing Poverty Targeting with Spatial Machine Learning: An application to Indonesia6 Mar 2025
12 newest of 24 All 24 (JSON)