Visualizing the PHATE of Neural Networks
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Abstract (arXiv)
Understanding why and how certain neural networks outperform others is key to guiding future development of network architectures and optimization methods. To this end, we introduce a novel visualization algorithm that reveals the internal geometry of such networks: Multislice PHATE (M-PHATE), the first method designed explicitly to visualize how a neural network's hidden representations of data evolve throughout the course of training. We demonstrate that our visualization provides intuitive, detailed summaries of the learning dynamics beyond simple global measures (i.e., validation loss and accuracy), without the need to access validation data. Furthermore, M-PHATE better captures both the dynamics and community structure of the hidden units as compared to visualization based on standard dimensionality reduction methods (e.g., ISOMAP, t-SNE). We demonstrate M-PHATE with two vignettes: continual learning and generalization. In the former, the M-PHATE visualizations display the mechanism of "catastrophic forgetting" which is a major challenge for learning in task-switching contexts. In the latter, our visualizations reveal how increased heterogeneity among hidden units correlates with improved generalization performance. An implementation of M-PHATE, along with scripts to reproduce the figures in this paper, is available at https://github.com/scottgigante/M-PHATE.
Key facts. Cited by 18 papers in the map (data through 7 Oct 2026). First posted on arXiv 7 Aug 2019.
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Citing papers per year: 2021: 5; 2022: 4; 2023: 1; 2024: 4; 2025: 2; 2026: 2.
18 papers.
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- 2022Reliability of CKA as a Similarity Measure in Deep Learningcited by 82
- 2021Neural population geometry: An approach for understanding biological and artificial neural networkscited by 52
- 2021Syntactic Perturbations Reveal Representational Correlates of Hierarchical Phrase Structure in Pretrained Language Modelscited by 14
- 2021Learning shared neural manifolds from multi-subject FMRI datacited by 8
- 2022Diffusion Curvature for Estimating Local Curvature in High Dimensional Datacited by 6
- 2025Establishing a Scale for Kullback-Leibler Divergence in Language Models Across Various Settingscited by 3
- 2022Evaluating Disentanglement in Generative Models Without Knowledge of Latent Factorscited by 2
- 2021Generating Attribution Maps with Disentangled Masked Backpropagationcited by 1
- 2024Multiway Multislice PHATE: Visualizing Hidden Dynamics of RNNs through Trainingcited by 1
- 2024Unsupervised discovery of the shared and private geometry in multi-view datacited by 1
- 2021On the Evolution of Neuron Communities in a Deep Learning Architecturecited by 0
- 2022Design of Explainability Module with Experts in the Loop for Visualization and Dynamic Adjustment of Continual Learningcited by 0
6 more
- 2023A Quantitative Approach to Predicting Representational Learning and Performance in Neural Networkscited by 0
- 2024Neural Surveillance: Live-Update Visualization of Latent Training Dynamicscited by 0
- 2024Noisy Data Visualization using Functional Data Analysiscited by 0
- 2025Domain-Adversarial Neural Network and Explainable AI for Reducing Tissue-of-Origin Signal in Pan-cancer Mortality Classificationcited by 0
- 2026Neighbor Embedding for High-Dimensional Sparse Poisson Datacited by 0
- 2026From Layers to Networks: Comparing Neural Representations via Diffusion Geometrycited by 0
- 2026From Layers to Networks: Comparing Neural Representations via Diffusion Geometry15 May 2026
- 2026Neighbor Embedding for High-Dimensional Sparse Poisson Data18 Apr 2026
- 2025Establishing a Scale for Kullback-Leibler Divergence in Language Models Across Various Settings21 May 2025
- 2025Domain-Adversarial Neural Network and Explainable AI for Reducing Tissue-of-Origin Signal in Pan-cancer Mortality Classification14 Apr 2025
- 2024Unsupervised discovery of the shared and private geometry in multi-view data22 Aug 2024
- 2024Noisy Data Visualization using Functional Data Analysis5 Jun 2024
- 2024Multiway Multislice PHATE: Visualizing Hidden Dynamics of RNNs through Training4 Jun 2024
- 2024Neural Surveillance: Live-Update Visualization of Latent Training Dynamics24 May 2024
- 2023A Quantitative Approach to Predicting Representational Learning and Performance in Neural Networks14 Jul 2023
- 2022Reliability of CKA as a Similarity Measure in Deep Learning28 Oct 2022
- 2022Evaluating Disentanglement in Generative Models Without Knowledge of Latent Factors4 Oct 2022
- 2022Diffusion Curvature for Estimating Local Curvature in High Dimensional Data8 Jun 2022
6 more
- 2022Design of Explainability Module with Experts in the Loop for Visualization and Dynamic Adjustment of Continual Learning14 Feb 2022
- 2021Learning shared neural manifolds from multi-subject FMRI data22 Dec 2021
- 2021On the Evolution of Neuron Communities in a Deep Learning Architecture8 Jun 2021
- 2021Syntactic Perturbations Reveal Representational Correlates of Hierarchical Phrase Structure in Pretrained Language Models15 Apr 2021
- 2021Neural population geometry: An approach for understanding biological and artificial neural networks14 Apr 2021
- 2021Generating Attribution Maps with Disentangled Masked Backpropagation17 Jan 2021
- 2022Reliability of CKA as a Similarity Measure in Deep Learningcited by 82
- 2021Neural population geometry: An approach for understanding biological and artificial neural networkscited by 52
- 2021Syntactic Perturbations Reveal Representational Correlates of Hierarchical Phrase Structure in Pretrained Language Modelscited by 14
- 2021Learning shared neural manifolds from multi-subject FMRI datacited by 8
- 2022Diffusion Curvature for Estimating Local Curvature in High Dimensional Datacited by 6
- 2025Establishing a Scale for Kullback-Leibler Divergence in Language Models Across Various Settingscited by 3
- 2022Evaluating Disentanglement in Generative Models Without Knowledge of Latent Factorscited by 2
- 2021Generating Attribution Maps with Disentangled Masked Backpropagationcited by 1
- 2024Multiway Multislice PHATE: Visualizing Hidden Dynamics of RNNs through Trainingcited by 1
- 2024Unsupervised discovery of the shared and private geometry in multi-view datacited by 1
- 2021On the Evolution of Neuron Communities in a Deep Learning Architecturecited by 0
- 2022Design of Explainability Module with Experts in the Loop for Visualization and Dynamic Adjustment of Continual Learningcited by 0
12 most cited of 18 All 18 (JSON)
- 2026From Layers to Networks: Comparing Neural Representations via Diffusion Geometry15 May 2026
- 2026Neighbor Embedding for High-Dimensional Sparse Poisson Data18 Apr 2026
- 2025Establishing a Scale for Kullback-Leibler Divergence in Language Models Across Various Settings21 May 2025
- 2025Domain-Adversarial Neural Network and Explainable AI for Reducing Tissue-of-Origin Signal in Pan-cancer Mortality Classification14 Apr 2025
- 2024Unsupervised discovery of the shared and private geometry in multi-view data22 Aug 2024
- 2024Noisy Data Visualization using Functional Data Analysis5 Jun 2024
- 2024Multiway Multislice PHATE: Visualizing Hidden Dynamics of RNNs through Training4 Jun 2024
- 2024Neural Surveillance: Live-Update Visualization of Latent Training Dynamics24 May 2024
- 2023A Quantitative Approach to Predicting Representational Learning and Performance in Neural Networks14 Jul 2023
- 2022Reliability of CKA as a Similarity Measure in Deep Learning28 Oct 2022
- 2022Evaluating Disentanglement in Generative Models Without Knowledge of Latent Factors4 Oct 2022
- 2022Diffusion Curvature for Estimating Local Curvature in High Dimensional Data8 Jun 2022
12 newest of 18 All 18 (JSON)