Connectivity-Optimized Representation Learning via Persistent Homology
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Abstract (arXiv)
We study the problem of learning representations with controllable connectivity properties. This is beneficial in situations when the imposed structure can be leveraged upstream. In particular, we control the connectivity of an autoencoder's latent space via a novel type of loss, operating on information from persistent homology. Under mild conditions, this loss is differentiable and we present a theoretical analysis of the properties induced by the loss. We choose one-class learning as our upstream task and demonstrate that the imposed structure enables informed parameter selection for modeling the in-class distribution via kernel density estimators. Evaluated on computer vision data, these one-class models exhibit competitive performance and, in a low sample size regime, outperform other methods by a large margin. Notably, our results indicate that a single autoencoder, trained on auxiliary (unlabeled) data, yields a mapping into latent space that can be reused across datasets for one-class learning.
Key facts. Cited by 43 papers in the map (data through 7 Oct 2026). First posted on arXiv 21 Jun 2019.
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Citing papers per year: 2021: 11; 2022: 7; 2023: 9; 2024: 5; 2025: 6; 2026: 5.
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- 2021Topology-Aware Segmentation Using Discrete Morse Theorycited by 75
- 2021Intrinsic Dimension, Persistent Homology and Generalization in Neural Networkscited by 70
- 2024Position: Topological Deep Learning is the New Frontier for Relational Learningcited by 65
- 2021Trigger Hunting with a Topological Prior for Trojan Detectioncited by 39
- 2021Link Prediction with Persistent Homology: An Interactive Viewcited by 37
- 2021Topological Detection of Trojaned Neural Networkscited by 34
- 2023Learning Topology-Preserving Data Representationscited by 30
- 2021A persistent homology-based topological loss for CNN-based multi-class segmentation of CMRcited by 21
- 2023Differentiable Euler Characteristic Transforms for Shape Classificationcited by 18
- 2021Activation Landscapes as a Topological Summary of Neural Network Performancecited by 17
- 2022Neural Approximation of Graph Topological Featurescited by 16
- 2023Generalization Bounds with Data-dependent Fractal Dimensionscited by 15
31 more
- 2021Topological Attention for Time Series Forecastingcited by 14
- 2024Boosting Graph Pooling with Persistent Homologycited by 9
- 2025Enhancing Graph Representation Learning with Localized Topological Featurescited by 6
- 2021A Gradient Sampling Algorithm for Stratified Maps with Applications to Topological Data Analysiscited by 5
- 2024Deep Regression Representation Learning with Topologycited by 4
- 2024Relative Representations: Topological and Geometric Perspectivescited by 4
- 2023Non-isotropic Persistent Homology: Leveraging the Metric Dependency of PHcited by 3
- 2025Efficient Connectivity-Preserving Instance Segmentation with Supervoxel-Based Loss Functioncited by 3
- 2021Optimisation of Spectral Wavelets for Persistence-based Graph Classificationcited by 2
- 2021Topological Information Retrieval with Dilation-Invariant Bottleneck Comparative Measurescited by 2
- 2022On the Convergence of Optimizing Persistent-Homology-Based Lossescited by 2
- 2022Do Neural Networks Trained with Topological Features Learn Different Internal Representations?cited by 2
- 2023Topology-Aware Loss for Aorta and Great Vessel Segmentation in Computed Tomography Imagescited by 2
- 2025T-REGS: Minimum Spanning Tree Regularization for Self-Supervised Learningcited by 2
- 2022Persistent Homological State-Space Estimation of Functional Human Brain Networks at Restcited by 1
- 2022Local Distance Preserving Auto-encoders using Continuous k-Nearest Neighbours Graphscited by 1
- 2023Differentially Private Topological Data Analysiscited by 1
- 2023Addressing caveats of neural persistence with deep graph persistencecited by 1
- 2023Topological Data Analysis in smart manufacturing: State of the art and futuredirectionscited by 1
- 2025Cover Learning for Large-Scale Topology Representationcited by 1
- 2022Faster Optimization on Sparse Graphs via Neural Reparametrizationcited by 0
- 2022Deep Invertible Approximation of Topologically Rich Maps between Manifoldscited by 0
- 2023Decorrelating neurons using persistencecited by 0
- 2024PI-Att: Topology Attention for Segmentation Networks through Adaptive Persistence Image Representationcited by 0
- 2025A Metric Topology of Deep Learning for Data Classificationcited by 0
- 2025Anatomy-DT: A Cross-Diffusion Digital Twin for Anatomical Evolutioncited by 0
- 2026Topo-ADV: Generating Topology-Driven Imperceptible Adversarial Point Cloudscited by 0
- 2026Twincher: Bijective Representation Learning for Robust Inversion of Continuous Systemscited by 0
- 2026Graph Transfer Learning via Shared Latent Geometry: Theory and Applicationscited by 0
- 2026Learning Coherent Representations: A Topological Approach to Interpretabilitycited by 0
- 2026Learning Transfers: Kan Extensions for Neural Invariantscited by 0
- 2026Learning Coherent Representations: A Topological Approach to Interpretability1 Jun 2026
- 2026Learning Transfers: Kan Extensions for Neural Invariants30 May 2026
- 2026Graph Transfer Learning via Shared Latent Geometry: Theory and Applications30 May 2026
- 2026Twincher: Bijective Representation Learning for Robust Inversion of Continuous Systems13 May 2026
- 2026Topo-ADV: Generating Topology-Driven Imperceptible Adversarial Point Clouds10 Apr 2026
- 2025T-REGS: Minimum Spanning Tree Regularization for Self-Supervised Learning27 Oct 2025
- 2025Anatomy-DT: A Cross-Diffusion Digital Twin for Anatomical Evolution29 Sep 2025
- 2025Cover Learning for Large-Scale Topology Representation12 Mar 2025
- 2025A Metric Topology of Deep Learning for Data Classification20 Jan 2025
- 2025Enhancing Graph Representation Learning with Localized Topological Features15 Jan 2025
- 2025Efficient Connectivity-Preserving Instance Segmentation with Supervoxel-Based Loss Function2 Jan 2025
- 2024Relative Representations: Topological and Geometric Perspectives17 Sep 2024
31 more
- 2024PI-Att: Topology Attention for Segmentation Networks through Adaptive Persistence Image Representation15 Aug 2024
- 2024Deep Regression Representation Learning with Topology22 Apr 2024
- 2024Boosting Graph Pooling with Persistent Homology26 Feb 2024
- 2024Position: Topological Deep Learning is the New Frontier for Relational Learning14 Feb 2024
- 2023Non-isotropic Persistent Homology: Leveraging the Metric Dependency of PH25 Oct 2023
- 2023Topological Data Analysis in smart manufacturing: State of the art and futuredirections13 Oct 2023
- 2023Differentiable Euler Characteristic Transforms for Shape Classification11 Oct 2023
- 2023Decorrelating neurons using persistence9 Aug 2023
- 2023Addressing caveats of neural persistence with deep graph persistence20 Jul 2023
- 2023Topology-Aware Loss for Aorta and Great Vessel Segmentation in Computed Tomography Images6 Jul 2023
- 2023Differentially Private Topological Data Analysis5 May 2023
- 2023Generalization Bounds with Data-dependent Fractal Dimensions6 Feb 2023
- 2023Learning Topology-Preserving Data Representations31 Jan 2023
- 2022Do Neural Networks Trained with Topological Features Learn Different Internal Representations?14 Nov 2022
- 2022Deep Invertible Approximation of Topologically Rich Maps between Manifolds2 Oct 2022
- 2022Local Distance Preserving Auto-encoders using Continuous k-Nearest Neighbours Graphs13 Jun 2022
- 2022On the Convergence of Optimizing Persistent-Homology-Based Losses6 Jun 2022
- 2022Faster Optimization on Sparse Graphs via Neural Reparametrization26 May 2022
- 2022Neural Approximation of Graph Topological Features28 Jan 2022
- 2022Persistent Homological State-Space Estimation of Functional Human Brain Networks at Rest1 Jan 2022
- 2021Intrinsic Dimension, Persistent Homology and Generalization in Neural Networks25 Nov 2021
- 2021Activation Landscapes as a Topological Summary of Neural Network Performance19 Oct 2021
- 2021Trigger Hunting with a Topological Prior for Trojan Detection15 Oct 2021
- 2021A Gradient Sampling Algorithm for Stratified Maps with Applications to Topological Data Analysis1 Sep 2021
- 2021A persistent homology-based topological loss for CNN-based multi-class segmentation of CMR27 Jul 2021
- 2021Topological Attention for Time Series Forecasting19 Jul 2021
- 2021Topological Detection of Trojaned Neural Networks11 Jun 2021
- 2021Topological Information Retrieval with Dilation-Invariant Bottleneck Comparative Measures4 Apr 2021
- 2021Topology-Aware Segmentation Using Discrete Morse Theory18 Mar 2021
- 2021Link Prediction with Persistent Homology: An Interactive View20 Feb 2021
- 2021Optimisation of Spectral Wavelets for Persistence-based Graph Classification10 Jan 2021
- 2021Topology-Aware Segmentation Using Discrete Morse Theorycited by 75
- 2021Intrinsic Dimension, Persistent Homology and Generalization in Neural Networkscited by 70
- 2024Position: Topological Deep Learning is the New Frontier for Relational Learningcited by 65
- 2021Link Prediction with Persistent Homology: An Interactive Viewcited by 37
- 2021Topological Detection of Trojaned Neural Networkscited by 34
- 2023Learning Topology-Preserving Data Representationscited by 30
- 2021A persistent homology-based topological loss for CNN-based multi-class segmentation of CMRcited by 21
- 2023Differentiable Euler Characteristic Transforms for Shape Classificationcited by 18
- 2021Activation Landscapes as a Topological Summary of Neural Network Performancecited by 17
- 2022Neural Approximation of Graph Topological Featurescited by 16
- 2023Generalization Bounds with Data-dependent Fractal Dimensionscited by 15
- 2021Topological Attention for Time Series Forecastingcited by 14
12 most cited of 42 All 42 (JSON)
- 2026Learning Coherent Representations: A Topological Approach to Interpretability1 Jun 2026
- 2026Learning Transfers: Kan Extensions for Neural Invariants30 May 2026
- 2026Graph Transfer Learning via Shared Latent Geometry: Theory and Applications30 May 2026
- 2026Twincher: Bijective Representation Learning for Robust Inversion of Continuous Systems13 May 2026
- 2026Topo-ADV: Generating Topology-Driven Imperceptible Adversarial Point Clouds10 Apr 2026
- 2025T-REGS: Minimum Spanning Tree Regularization for Self-Supervised Learning27 Oct 2025
- 2025Anatomy-DT: A Cross-Diffusion Digital Twin for Anatomical Evolution29 Sep 2025
- 2025Cover Learning for Large-Scale Topology Representation12 Mar 2025
- 2025A Metric Topology of Deep Learning for Data Classification20 Jan 2025
- 2025Enhancing Graph Representation Learning with Localized Topological Features15 Jan 2025
- 2025Efficient Connectivity-Preserving Instance Segmentation with Supervoxel-Based Loss Function2 Jan 2025
- 2024Relative Representations: Topological and Geometric Perspectives17 Sep 2024
12 newest of 42 All 42 (JSON)