Multiple instance learning with graph neural networks
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Abstract (arXiv)
Multiple instance learning (MIL) aims to learn the mapping between a bag of instances and the bag-level label. In this paper, we propose a new end-to-end graph neural network (GNN) based algorithm for MIL: we treat each bag as a graph and use GNN to learn the bag embedding, in order to explore the useful structural information among instances in bags. The final graph representation is fed into a classifier for label prediction. Our algorithm is the first attempt to use GNN for MIL. We empirically show that the proposed algorithm achieves the state of the art performance on several popular MIL data sets without losing model interpretability.
Key facts. Cited by 25 papers in the map (data through 7 Oct 2026). First posted on arXiv 12 Jun 2019.
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Citing papers per year: 2021: 5; 2022: 6; 2023: 7; 2024: 3; 2025: 3; 2026: 1.
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- 2021TransMIL: Transformer based Correlated Multiple Instance Learning for Whole Slide Image Classificationcited by 549
- 2022DTFD-MIL: Double-Tier Feature Distillation Multiple Instance Learning for Histopathology Whole Slide Image Classificationcited by 254
- 2022Towards Label-efficient Automatic Diagnosis and Analysis: A Comprehensive Survey of Advanced Deep Learning-based Weakly-supervised, Semi-supervised and Self-supervised Techniques in Histopathological Image Analysiscited by 29
- 2021ProtoMIL: Multiple Instance Learning with Prototypical Parts for Whole-Slide Image Classificationcited by 22
- 2022Entity-centered Cross-document Relation Extractioncited by 18
- 2022Non-Markovian Reward Modelling from Trajectory Labels via Interpretable Multiple Instance Learningcited by 13
- 2023CAMIL: Context-Aware Multiple Instance Learning for Cancer Detection and Subtyping in Whole Slide Imagescited by 13
- 2023Reproducibility in Multiple Instance Learning: A Case For Algorithmic Unit Testscited by 11
- 2021SparseConvMIL: Sparse Convolutional Context-Aware Multiple Instance Learning for Whole Slide Image Classificationcited by 10
- 2022Model Agnostic Interpretability for Multiple Instance Learningcited by 10
- 2025How Effective Can Dropout Be in Multiple Instance Learning ?cited by 7
- 2022Bag Graph: Multiple Instance Learning using Bayesian Graph Neural Networkscited by 6
13 more
- 2023SC-MIL: Sparsely Coded Multiple Instance Learning for Whole Slide Image Classificationcited by 6
- 2021HAMIL: Hierarchical Aggregation-Based Multi-Instance Learning for Microscopy Image Classificationcited by 3
- 2021Multi-Instance Learning by Utilizing Structural Relationship among Instancescited by 1
- 2023Cascaded Cross-Attention Networks for Data-Efficient Whole-Slide Image Classification Using Transformerscited by 1
- 2023Deep Multiple Instance Learning with Distance-Aware Self-Attentioncited by 1
- 2023Dual-Query Multiple Instance Learning for Dynamic Meta-Embedding based Tumor Classificationcited by 1
- 2024Multi-Resolution Histopathology Patch Graphs for Ovarian Cancer Subtypingcited by 1
- 2024Rethinking Multiple Instance Learning: Developing an Instance-Level Classifier via Weakly-Supervised Self-Trainingcited by 1
- 2024Text Classification using Graph Convolutional Networks: A Comprehensive Surveycited by 1
- 2023Topological Inductive Bias fosters Multiple Instance Learning in Data-Scarce Scenarioscited by 0
- 2025Weakly Supervised Vulnerability Localization via Multiple Instance Learningcited by 0
- 2025A Vector Symbolic Approach to Multiple Instance Learningcited by 0
- 2026Multi-Label Proportion Learning for Sea-Ice Type Predictioncited by 0
- 2026Multi-Label Proportion Learning for Sea-Ice Type Prediction14 Sep 2026
- 2025A Vector Symbolic Approach to Multiple Instance Learning20 Nov 2025
- 2025Weakly Supervised Vulnerability Localization via Multiple Instance Learning14 Sep 2025
- 2025How Effective Can Dropout Be in Multiple Instance Learning ?21 Apr 2025
- 2024Text Classification using Graph Convolutional Networks: A Comprehensive Survey12 Oct 2024
- 2024Rethinking Multiple Instance Learning: Developing an Instance-Level Classifier via Weakly-Supervised Self-Training9 Aug 2024
- 2024Multi-Resolution Histopathology Patch Graphs for Ovarian Cancer Subtyping25 Jul 2024
- 2023SC-MIL: Sparsely Coded Multiple Instance Learning for Whole Slide Image Classification31 Oct 2023
- 2023Reproducibility in Multiple Instance Learning: A Case For Algorithmic Unit Tests27 Oct 2023
- 2023Topological Inductive Bias fosters Multiple Instance Learning in Data-Scarce Scenarios26 Jul 2023
- 2023Dual-Query Multiple Instance Learning for Dynamic Meta-Embedding based Tumor Classification14 Jul 2023
- 2023Deep Multiple Instance Learning with Distance-Aware Self-Attention17 May 2023
13 more
- 2023Cascaded Cross-Attention Networks for Data-Efficient Whole-Slide Image Classification Using Transformers11 May 2023
- 2023CAMIL: Context-Aware Multiple Instance Learning for Cancer Detection and Subtyping in Whole Slide Images9 May 2023
- 2022Entity-centered Cross-document Relation Extraction29 Oct 2022
- 2022Towards Label-efficient Automatic Diagnosis and Analysis: A Comprehensive Survey of Advanced Deep Learning-based Weakly-supervised, Semi-supervised and Self-supervised Techniques in Histopathological Image Analysis18 Aug 2022
- 2022Non-Markovian Reward Modelling from Trajectory Labels via Interpretable Multiple Instance Learning30 May 2022
- 2022DTFD-MIL: Double-Tier Feature Distillation Multiple Instance Learning for Histopathology Whole Slide Image Classification22 Mar 2022
- 2022Bag Graph: Multiple Instance Learning using Bayesian Graph Neural Networks22 Feb 2022
- 2022Model Agnostic Interpretability for Multiple Instance Learning27 Jan 2022
- 2021ProtoMIL: Multiple Instance Learning with Prototypical Parts for Whole-Slide Image Classification24 Aug 2021
- 2021TransMIL: Transformer based Correlated Multiple Instance Learning for Whole Slide Image Classification2 Jun 2021
- 2021SparseConvMIL: Sparse Convolutional Context-Aware Multiple Instance Learning for Whole Slide Image Classification6 May 2021
- 2021HAMIL: Hierarchical Aggregation-Based Multi-Instance Learning for Microscopy Image Classification17 Mar 2021
- 2021Multi-Instance Learning by Utilizing Structural Relationship among Instances3 Feb 2021
- 2021TransMIL: Transformer based Correlated Multiple Instance Learning for Whole Slide Image Classificationcited by 549
- 2022DTFD-MIL: Double-Tier Feature Distillation Multiple Instance Learning for Histopathology Whole Slide Image Classificationcited by 254
- 2022Towards Label-efficient Automatic Diagnosis and Analysis: A Comprehensive Survey of Advanced Deep Learning-based Weakly-supervised, Semi-supervised and Self-supervised Techniques in Histopathological Image Analysiscited by 29
- 2021ProtoMIL: Multiple Instance Learning with Prototypical Parts for Whole-Slide Image Classificationcited by 22
- 2022Entity-centered Cross-document Relation Extractioncited by 18
- 2023CAMIL: Context-Aware Multiple Instance Learning for Cancer Detection and Subtyping in Whole Slide Imagescited by 13
- 2023Reproducibility in Multiple Instance Learning: A Case For Algorithmic Unit Testscited by 11
- 2021SparseConvMIL: Sparse Convolutional Context-Aware Multiple Instance Learning for Whole Slide Image Classificationcited by 10
- 2022Model Agnostic Interpretability for Multiple Instance Learningcited by 10
- 2025How Effective Can Dropout Be in Multiple Instance Learning ?cited by 7
- 2022Bag Graph: Multiple Instance Learning using Bayesian Graph Neural Networkscited by 6
- 2023SC-MIL: Sparsely Coded Multiple Instance Learning for Whole Slide Image Classificationcited by 6
12 most cited of 24 All 24 (JSON)
- 2026Multi-Label Proportion Learning for Sea-Ice Type Prediction14 Sep 2026
- 2025A Vector Symbolic Approach to Multiple Instance Learning20 Nov 2025
- 2025Weakly Supervised Vulnerability Localization via Multiple Instance Learning14 Sep 2025
- 2025How Effective Can Dropout Be in Multiple Instance Learning ?21 Apr 2025
- 2024Text Classification using Graph Convolutional Networks: A Comprehensive Survey12 Oct 2024
- 2024Rethinking Multiple Instance Learning: Developing an Instance-Level Classifier via Weakly-Supervised Self-Training9 Aug 2024
- 2024Multi-Resolution Histopathology Patch Graphs for Ovarian Cancer Subtyping25 Jul 2024
- 2023SC-MIL: Sparsely Coded Multiple Instance Learning for Whole Slide Image Classification31 Oct 2023
- 2023Reproducibility in Multiple Instance Learning: A Case For Algorithmic Unit Tests27 Oct 2023
- 2023Topological Inductive Bias fosters Multiple Instance Learning in Data-Scarce Scenarios26 Jul 2023
- 2023Dual-Query Multiple Instance Learning for Dynamic Meta-Embedding based Tumor Classification14 Jul 2023
- 2023Deep Multiple Instance Learning with Distance-Aware Self-Attention17 May 2023
12 newest of 24 All 24 (JSON)