A Comparative Study for Unsupervised Network Representation Learning
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Abstract (arXiv)
There has been appreciable progress in unsupervised network representation learning (UNRL) approaches over graphs recently with flexible random-walk approaches, new optimization objectives and deep architectures. However, there is no common ground for systematic comparison of embeddings to understand their behavior for different graphs and tasks. In this paper we theoretically group different approaches under a unifying framework and empirically investigate the effectiveness of different network representation methods. In particular, we argue that most of the UNRL approaches either explicitly or implicit model and exploit context information of a node. Consequently, we propose a framework that casts a variety of approaches -- random walk based, matrix factorization and deep learning based -- into a unified context-based optimization function. We systematically group the methods based on their similarities and differences. We study the differences among these methods in detail which we later use to explain their performance differences (on downstream tasks). We conduct a large-scale empirical study considering 9 popular and recent UNRL techniques and 11 real-world datasets with varying structural properties and two common tasks -- node classification and link prediction. We find that there is no single method that is a clear winner and that the choice of a suitable method is dictated by certain properties of the embedding methods, task and structural properties of the underlying graph. In addition we also report the common pitfalls in evaluation of UNRL methods and come up with suggestions for experimental design and interpretation of results.
Key facts. Cited by 16 papers in the map (data through 7 Oct 2026). First posted on arXiv 19 Mar 2019.
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Citing papers per year: 2021: 6; 2022: 3; 2023: 1; 2024: 2; 2025: 3; 2026: 1.
16 papers.
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- 2022GraphWorld: Fake Graphs Bring Real Insights for GNNscited by 56
- 2021Zorro: Valid, Sparse, and Stable Explanations in Graph Neural Networkscited by 34
- 2021CitationIE: Leveraging the Citation Graph for Scientific Information Extractioncited by 19
- 2022BAGEL: A Benchmark for Assessing Graph Neural Network Explanationscited by 11
- 2021Alignment and stability of embeddings: measurement and inference improvementcited by 4
- 2024GraphScale: A Framework to Enable Machine Learning over Billion-node Graphscited by 4
- 2022Impact Of Missing Data Imputation On The Fairness And Accuracy Of Graph Node Classifierscited by 3
- 2021Free Energy Node Embedding via Generalized Skip-gram with Negative Samplingcited by 2
- 2021Network representation learning systematic review: ancestors and current development statecited by 1
- 2021On the Use of Unrealistic Predictions in Hundreds of Papers Evaluating Graph Representationscited by 1
- 2024Disentangled and Self-Explainable Node Representation Learningcited by 1
- 2025Node Embeddings via Neighbor Embeddingscited by 1
4 more
- 2023Semantic Representation Learning of Scientific Literature based on Adaptive Feature and Graph Neural Networkcited by 0
- 2025Learning Graph Node Embeddings by Smooth Pair Samplingcited by 0
- 2025Population-Scale Network Embeddings Expose Educational Divides in Network Structure Related to Right-Wing Populist Votingcited by 0
- 2026Manifold-Preserving Superpixel Hierarchies and Embeddings for the Exploration of High-Dimensional Imagescited by 0
- 2026Manifold-Preserving Superpixel Hierarchies and Embeddings for the Exploration of High-Dimensional Images27 Feb 2026
- 2025Population-Scale Network Embeddings Expose Educational Divides in Network Structure Related to Right-Wing Populist Voting28 Aug 2025
- 2025Node Embeddings via Neighbor Embeddings31 Mar 2025
- 2025Learning Graph Node Embeddings by Smooth Pair Sampling22 Jan 2025
- 2024Disentangled and Self-Explainable Node Representation Learning28 Oct 2024
- 2024GraphScale: A Framework to Enable Machine Learning over Billion-node Graphs22 Jul 2024
- 2023Semantic Representation Learning of Scientific Literature based on Adaptive Feature and Graph Neural Network1 Nov 2023
- 2022Impact Of Missing Data Imputation On The Fairness And Accuracy Of Graph Node Classifiers1 Nov 2022
- 2022BAGEL: A Benchmark for Assessing Graph Neural Network Explanations28 Jun 2022
- 2022GraphWorld: Fake Graphs Bring Real Insights for GNNs28 Feb 2022
- 2021On the Use of Unrealistic Predictions in Hundreds of Papers Evaluating Graph Representations8 Dec 2021
- 2021Network representation learning systematic review: ancestors and current development state14 Sep 2021
4 more
- 2021CitationIE: Leveraging the Citation Graph for Scientific Information Extraction3 Jun 2021
- 2021Free Energy Node Embedding via Generalized Skip-gram with Negative Sampling19 May 2021
- 2021Zorro: Valid, Sparse, and Stable Explanations in Graph Neural Networks18 May 2021
- 2021Alignment and stability of embeddings: measurement and inference improvement18 Jan 2021
- 2022GraphWorld: Fake Graphs Bring Real Insights for GNNscited by 56
- 2021Zorro: Valid, Sparse, and Stable Explanations in Graph Neural Networkscited by 34
- 2021CitationIE: Leveraging the Citation Graph for Scientific Information Extractioncited by 19
- 2022BAGEL: A Benchmark for Assessing Graph Neural Network Explanationscited by 11
- 2021Alignment and stability of embeddings: measurement and inference improvementcited by 4
- 2024GraphScale: A Framework to Enable Machine Learning over Billion-node Graphscited by 4
- 2022Impact Of Missing Data Imputation On The Fairness And Accuracy Of Graph Node Classifierscited by 3
- 2021Free Energy Node Embedding via Generalized Skip-gram with Negative Samplingcited by 2
- 2021Network representation learning systematic review: ancestors and current development statecited by 1
- 2021On the Use of Unrealistic Predictions in Hundreds of Papers Evaluating Graph Representationscited by 1
- 2024Disentangled and Self-Explainable Node Representation Learningcited by 1
- 2025Node Embeddings via Neighbor Embeddingscited by 1
12 most cited of 16 All 16 (JSON)
- 2026Manifold-Preserving Superpixel Hierarchies and Embeddings for the Exploration of High-Dimensional Images27 Feb 2026
- 2025Population-Scale Network Embeddings Expose Educational Divides in Network Structure Related to Right-Wing Populist Voting28 Aug 2025
- 2025Node Embeddings via Neighbor Embeddings31 Mar 2025
- 2025Learning Graph Node Embeddings by Smooth Pair Sampling22 Jan 2025
- 2024Disentangled and Self-Explainable Node Representation Learning28 Oct 2024
- 2024GraphScale: A Framework to Enable Machine Learning over Billion-node Graphs22 Jul 2024
- 2023Semantic Representation Learning of Scientific Literature based on Adaptive Feature and Graph Neural Network1 Nov 2023
- 2022Impact Of Missing Data Imputation On The Fairness And Accuracy Of Graph Node Classifiers1 Nov 2022
- 2022BAGEL: A Benchmark for Assessing Graph Neural Network Explanations28 Jun 2022
- 2022GraphWorld: Fake Graphs Bring Real Insights for GNNs28 Feb 2022
- 2021On the Use of Unrealistic Predictions in Hundreds of Papers Evaluating Graph Representations8 Dec 2021
- 2021Network representation learning systematic review: ancestors and current development state14 Sep 2021
12 newest of 16 All 16 (JSON)