Graph Dynamical Networks for Unsupervised Learning of Atomic Scale Dynamics in Materials
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Abstract (arXiv)
Understanding the dynamical processes that govern the performance of functional materials is essential for the design of next generation materials to tackle global energy and environmental challenges. Many of these processes involve the dynamics of individual atoms or small molecules in condensed phases, e.g. lithium ions in electrolytes, water molecules in membranes, molten atoms at interfaces, etc., which are difficult to understand due to the complexity of local environments. In this work, we develop graph dynamical networks, an unsupervised learning approach for understanding atomic scale dynamics in arbitrary phases and environments from molecular dynamics simulations. We show that important dynamical information can be learned for various multi-component amorphous material systems, which is difficult to obtain otherwise. With the large amounts of molecular dynamics data generated everyday in nearly every aspect of materials design, this approach provides a broadly useful, automated tool to understand atomic scale dynamics in material systems.
Key facts. Cited by 13 papers in the map (data through 7 Oct 2026). First posted on arXiv 18 Feb 2019.
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Citing papers per year: 2021: 3; 2022: 3; 2023: 3; 2024: 1; 2025: 2; 2026: 1.
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- 2022GraphVAMPNet, using graph neural networks and variational approach to markov processes for dynamical modeling of biomoleculescited by 8
- 2021Materials Representation and Transfer Learning for Multi-Property Predictioncited by 7
- 2025HiLAB: A Hybrid Inverse-Design Frameworkcited by 6
- 2021CKNet: A Convolutional Neural Network Based on Koopman Operator for Modeling Latent Dynamics from Pixelscited by 5
- 2024Using pretrained graph neural networks with token mixers as geometric featurizers for conformational dynamicscited by 5
- 2022Few-Sample Traffic Prediction with Graph Networks using Locale as Relational Inductive Biasescited by 3
- 2021Self-Supervised Decomposition, Disentanglement and Prediction of Video Sequences while Interpreting Dynamics: A Koopman Perspectivecited by 2
- 2023Internal-Coordinate Density Modelling of Protein Structure: Covariance Matterscited by 1
- 2025Hierarchical geometric deep learning enables scalable analysis of molecular dynamicscited by 1
- 2026From Natural Language to Materials Discovery:The Materials Knowledge Navigation Agentcited by 1
- 2022Prediction of transport property via machine learning molecular movementscited by 0
- 2023Dictionary-based Manifold Learningcited by 0
- 2026From Natural Language to Materials Discovery:The Materials Knowledge Navigation Agent11 Feb 2026
- 2025Hierarchical geometric deep learning enables scalable analysis of molecular dynamics6 Dec 2025
- 2025HiLAB: A Hybrid Inverse-Design Framework23 May 2025
- 2024Using pretrained graph neural networks with token mixers as geometric featurizers for conformational dynamics30 Sep 2024
- 2023Elucidating Interfacial Dynamics of Ti-Al Systems Using Molecular Dynamics Simulation and Markov State Modeling26 Jun 2023
- 2023Internal-Coordinate Density Modelling of Protein Structure: Covariance Matters27 Feb 2023
- 2023Dictionary-based Manifold Learning1 Feb 2023
- 2022Few-Sample Traffic Prediction with Graph Networks using Locale as Relational Inductive Biases8 Mar 2022
- 2022Prediction of transport property via machine learning molecular movements7 Mar 2022
- 2022GraphVAMPNet, using graph neural networks and variational approach to markov processes for dynamical modeling of biomolecules12 Jan 2022
- 2021Self-Supervised Decomposition, Disentanglement and Prediction of Video Sequences while Interpreting Dynamics: A Koopman Perspective1 Oct 2021
- 2021Materials Representation and Transfer Learning for Multi-Property Prediction4 Jun 2021
- 2022GraphVAMPNet, using graph neural networks and variational approach to markov processes for dynamical modeling of biomoleculescited by 8
- 2021Materials Representation and Transfer Learning for Multi-Property Predictioncited by 7
- 2025HiLAB: A Hybrid Inverse-Design Frameworkcited by 6
- 2021CKNet: A Convolutional Neural Network Based on Koopman Operator for Modeling Latent Dynamics from Pixelscited by 5
- 2024Using pretrained graph neural networks with token mixers as geometric featurizers for conformational dynamicscited by 5
- 2022Few-Sample Traffic Prediction with Graph Networks using Locale as Relational Inductive Biasescited by 3
- 2021Self-Supervised Decomposition, Disentanglement and Prediction of Video Sequences while Interpreting Dynamics: A Koopman Perspectivecited by 2
- 2023Internal-Coordinate Density Modelling of Protein Structure: Covariance Matterscited by 1
- 2025Hierarchical geometric deep learning enables scalable analysis of molecular dynamicscited by 1
- 2026From Natural Language to Materials Discovery:The Materials Knowledge Navigation Agentcited by 1
- 2022Prediction of transport property via machine learning molecular movementscited by 0
- 2023Dictionary-based Manifold Learningcited by 0
12 most cited of 13 All 13 (JSON)
- 2026From Natural Language to Materials Discovery:The Materials Knowledge Navigation Agent11 Feb 2026
- 2025Hierarchical geometric deep learning enables scalable analysis of molecular dynamics6 Dec 2025
- 2025HiLAB: A Hybrid Inverse-Design Framework23 May 2025
- 2024Using pretrained graph neural networks with token mixers as geometric featurizers for conformational dynamics30 Sep 2024
- 2023Elucidating Interfacial Dynamics of Ti-Al Systems Using Molecular Dynamics Simulation and Markov State Modeling26 Jun 2023
- 2023Internal-Coordinate Density Modelling of Protein Structure: Covariance Matters27 Feb 2023
- 2023Dictionary-based Manifold Learning1 Feb 2023
- 2022Few-Sample Traffic Prediction with Graph Networks using Locale as Relational Inductive Biases8 Mar 2022
- 2022Prediction of transport property via machine learning molecular movements7 Mar 2022
- 2022GraphVAMPNet, using graph neural networks and variational approach to markov processes for dynamical modeling of biomolecules12 Jan 2022
- 2021Self-Supervised Decomposition, Disentanglement and Prediction of Video Sequences while Interpreting Dynamics: A Koopman Perspective1 Oct 2021
- 2021Materials Representation and Transfer Learning for Multi-Property Prediction4 Jun 2021
12 newest of 13 All 13 (JSON)