mlsanityData to 14 Oct 2026

When Does Task-Aware Imputation Matter? An Analysis of Robustness Under Train-Test Mismatch

arXiv 2610.20342 ↗First posted 14 Oct 2026cs.LGcited by 0

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Abstract (arXiv)

Missing data is a pervasive challenge in machine learning, often degrading predictive performance and complicating model deployment. Most existing approaches treat imputation as a preprocessing step independent of the downstream task, a separation that becomes problematic under train-test mismatches in missingness mechanisms or rates. We introduce a unified framework that treats missing entries as variables in a task-conditioned optimization problem. We instantiate this framework in two settings: an amortized approach for scenarios with missing data at both training and test time, and a latent optimization approach for settings where only training data is incomplete. The evaluation is conducted on 98 tabular datasets, and robustness under train-test mismatches is assessed on 36 datasets. Results reveal that reconstruction error constitutes a poor proxy for predictive utility (Spearman rho approximately 0.16 to 0.32), and that task-aware imputation becomes critical in scenarios where classical methods fail to recover complete-data performance, achieving win rates of up to 80% in challenging train-test mismatch scenarios.

Key facts. No citing papers in the map yet (data through 14 Oct 2026). Builds on 14 of its 35 references that are in the map. First posted on arXiv 14 Oct 2026.

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14 of 35 references.

References · 14

  1. 2021Revisiting Deep Learning Models for Tabular Datacited by 740
  2. 2018GAIN: Missing Data Imputation using Generative Adversarial Netscited by 352
  3. 2018Handling Incomplete Heterogeneous Data using VAEscited by 149
  4. 2020Handling Missing Data with Graph Representation Learningcited by 133
  5. 2020Missing Data Imputation using Optimal Transportcited by 100
  6. 2022HyperImpute: Generalized Iterative Imputation with Automatic Model Selectioncited by 83
  7. 2019OpenML-Python: an extensible Python API for OpenMLcited by 63
  8. 2023Generating and Imputing Tabular Data via Diffusion and Flow-based Gradient-Boosted Treescited by 62
  9. 2021MIRACLE: Causally-Aware Imputation via Learning Missing Data Mechanismscited by 51
  10. 2023ReMasker: Imputing Tabular Data with Masked Autoencodingcited by 37
  11. 2022Classification of datasets with imputed missing values: does imputation quality matter?cited by 22
  12. 2022Domain Adaptation under Missingness Shiftcited by 13
2 more
  1. 2022GEDI: A Graph-based End-to-end Data Imputation Frameworkcited by 5
  2. 2024missForestPredict -- Missing data imputation for prediction settingscited by 2

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