When Does Task-Aware Imputation Matter? An Analysis of Robustness Under Train-Test Mismatch
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Abstract (arXiv)
Missing data is a pervasive challenge in machine learning, often degrading predictive performance and complicating model deployment. Most existing approaches treat imputation as a preprocessing step independent of the downstream task, a separation that becomes problematic under train-test mismatches in missingness mechanisms or rates. We introduce a unified framework that treats missing entries as variables in a task-conditioned optimization problem. We instantiate this framework in two settings: an amortized approach for scenarios with missing data at both training and test time, and a latent optimization approach for settings where only training data is incomplete. The evaluation is conducted on 98 tabular datasets, and robustness under train-test mismatches is assessed on 36 datasets. Results reveal that reconstruction error constitutes a poor proxy for predictive utility (Spearman rho approximately 0.16 to 0.32), and that task-aware imputation becomes critical in scenarios where classical methods fail to recover complete-data performance, achieving win rates of up to 80% in challenging train-test mismatch scenarios.
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References · 14
- 2021Revisiting Deep Learning Models for Tabular Datacited by 740
- 2018GAIN: Missing Data Imputation using Generative Adversarial Netscited by 352
- 2018Handling Incomplete Heterogeneous Data using VAEscited by 149
- 2020Handling Missing Data with Graph Representation Learningcited by 133
- 2020Missing Data Imputation using Optimal Transportcited by 100
- 2022HyperImpute: Generalized Iterative Imputation with Automatic Model Selectioncited by 83
- 2019OpenML-Python: an extensible Python API for OpenMLcited by 63
- 2023Generating and Imputing Tabular Data via Diffusion and Flow-based Gradient-Boosted Treescited by 62
- 2021MIRACLE: Causally-Aware Imputation via Learning Missing Data Mechanismscited by 51
- 2023ReMasker: Imputing Tabular Data with Masked Autoencodingcited by 37
- 2022Classification of datasets with imputed missing values: does imputation quality matter?cited by 22
- 2022Domain Adaptation under Missingness Shiftcited by 13
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