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Synthetic training for long-tail haemorrhagic lesion segmentation in data-scarce settings

arXiv 2610.01542 ↗First posted 1 Oct 2026cs.CVcited by 0

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Abstract (arXiv)

Cerebral microbleeds (CMBs) and cortical superficial siderosis (cSS) are imaging markers of cerebral small vessel disease, but their automated segmentation is limited by the scarcity of positive cases and voxel-level annotations. We propose a synthetic training framework for long-tail haemorrhagic lesion segmentation that requires no real lesion annotations for training and leverages radiological description of the lesions. Starting from anatomical brain parcellations, the framework applies spatial augmentation and voxel resampling, procedurally inserts cSS and CMB labels using clinical priors on lesion location and morphology, and synthesises images through randomised intensity assignment, blurring, and Rician noise simulation. Models were trained on dynamically generated image-label pairs and evaluated against manual delineations in 10 cSS cases and 13 CMB cases. The proposed configurations outperformed classical filter baselines. For cSS, the hypointensity constrained model achieved higher AUPRC and AUROC than the Frangi filter (AUPRC: 0.284 vs 0.083; AUROC: 0.907 vs 0.731). For CMBs, explicit synthesis of blood vessels as lesion mimics improved performance over the classical baseline (AUPRC: 0.538 vs 0.004; AUROC: 0.999 vs 0.968). These results support our proposal as a feasible strategy for data-scarce haemorrhagic lesion segmentation.

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References · 8

  1. 2021SynthSeg: Segmentation of brain MRI scans of any contrast and resolution without retrainingcited by 237
  2. 2022SynthStrip: Skull-Stripping for Any Brain Imagecited by 127
  3. 2022Robust machine learning segmentation for large-scale analysis of heterogeneous clinical brain MRI datasetscited by 51
  4. 2023Anatomy-aware and acquisition-agnostic joint registration with SynthMorphcited by 19
  5. 2023Quantifying white matter hyperintensity and brain volumes in heterogeneous clinical and low-field portable MRIcited by 15
  6. 2022Where is VALDO? VAscular Lesions Detection and segmentatiOn challenge at MICCAI 2021cited by 14
  7. 2024Synthetic Data for Robust Stroke Segmentationcited by 4
  8. 2026SIAM: Head and Brain MRI Segmentation from Few High-Quality Templates via Synthetic Trainingcited by 2

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