MARCO: Multi-Round Agentic Reinforcement for Conditional Molecular Optimization
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Abstract (arXiv)
Molecular optimization is inherently iterative: a candidate is proposed, evaluated against several objectives, and revised while preserving a relationship to the source molecule. Most instruction-following models instead emit one edited molecule, forcing validity, property improvement, and similarity control into a single response. We introduce MARCO, an evaluator-grounded reinforcement-learning framework that trains molecular editors on bounded proposal--feedback--revision trajectories. MARCO aggregates shaped turn rewards into an undiscounted trajectory return for group-relative policy optimization. We evaluate two consequences of this training: Same-1 tests the trained policy under a one-response budget, while Same-5 tests whether the same policy can use verifier feedback when up to five responses are available. Across the three-objective MuMOInstruct benchmark, three Qwen backbones, and seen/unseen instruction splits, SFT-initialized MARCO obtains the highest product of property success rate and similarity in every reported primary setting. Same-5 further improves the observed score under the tested budget, while four-objective and public-checkpoint experiments test transfer across constraint sets and initialization regimes.
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References · 18
- 2017Proximal Policy Optimization Algorithmscited by 15,215
- 2024DeepSeekMath: Pushing the Limits of Mathematical Reasoning in Open Language Modelscited by 9,379
- 2018Junction Tree Variational Autoencoder for Molecular Graph Generationcited by 652
- 2023ChemCrow: Augmenting large-language models with chemistry toolscited by 631
- 2025RAGEN: Understanding Self-Evolution in LLM Agents via Multi-Turn Reinforcement Learningcited by 386
- 2018Graph Convolutional Policy Network for Goal-Directed Molecular Graph Generationcited by 364
- 2018GuacaMol: Benchmarking Models for De Novo Molecular Designcited by 297
- 2017Molecular De Novo Design through Deep Reinforcement Learningcited by 267
- 2024ArCHer: Training Language Model Agents via Hierarchical Multi-Turn RLcited by 228
- 2022Sample Efficiency Matters: A Benchmark for Practical Molecular Optimizationcited by 155
- 2024LlaSMol: Advancing Large Language Models for Chemistry with a Large-Scale, Comprehensive, High-Quality Instruction Tuning Datasetcited by 128
- 2023DrugAssist: A Large Language Model for Molecule Optimizationcited by 59
6 more
- 2020MIMOSA: Multi-constraint Molecule Sampling for Molecule Optimizationcited by 49
- 2020A Deep Generative Model for Molecule Optimization via One Fragment Modificationcited by 37
- 2024A Survey of Generative AI for de novo Drug Design: New Frontiers in Molecule and Protein Generationcited by 29
- 2024Speak-to-Structure: Evaluating LLMs in Open-domain Natural Language-Driven Molecule Generationcited by 25
- 2026Reference-guided Policy Optimization for Molecular Optimization via LLM Reasoningcited by 6
- 2025MolAct: An Agentic RL Framework for Molecular Editing and Property Optimizationcited by 2
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- 2026On the Design Space of Discrete Diffusion Online Adaptation for Molecular Optimization
- 2026Active-GRPO: Adaptive Imitation and Self-Improving Reasoning for Molecular Optimization
- 2026C-MORAL: Controllable Multi-Objective Molecular Optimization with Reinforcement Alignment for LLMs
- 2026MolMem: Memory-Augmented Agentic Reinforcement Learning for Sample-Efficient Molecular Optimization
- 2026MDForge: Agentic Molecular Dynamics Pipeline Design under Sparse Simulator Feedback
- 2026M3OS: A Monte Carlo Graph Search-Orchestrated Multi-Agent LLM System for Evidence-Traced Molecular Optimization